| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,445,932 – 12,446,039 |
| Length | 107 |
| Max. P | 0.520746 |
| Location | 12,445,932 – 12,446,039 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.49 |
| Mean single sequence MFE | -36.57 |
| Consensus MFE | -23.93 |
| Energy contribution | -25.15 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12445932 107 - 23771897 UCCUCCAGAUCCGCAUCCUCCUCGUUGUUCCUGGCCAGGUGGACCACCACGCUCUUGGUGAGAUCCGCUUGCUAUUUCAACCG-------AAGCGGAUGAAACCAGGAGAAAGU---- ..((((.......(((((.(.((((((....((((.(((((((((((((......))))).).)))))))))))...))).))-------).).)))))......)))).....---- ( -37.82) >DroSec_CAF1 150 107 - 1 UCCUCCAUAUCCGCAUCCUCCUCGUUGUUCCUGGCCAGGUGGACAACCACGCUUUUGGUGAGGUCCGCUUGCUAUUGCAACCG-------GAGCGGAUGAAAUCAGGAGAAAGU---- ..((((..((((((.(((.....(((((...((((.((((((((.((((......))))...))))))))))))..))))).)-------))))))))(....).)))).....---- ( -42.90) >DroSim_CAF1 150 107 - 1 UCCUCCAUAUCCGCAUCCUCCUCGUUGUUCCUGGCCAGGUGGACAACCACGCUCUUGGUGAGGUCCGCUUGCUAUUGCAACCG-------AAGCGGAUGAAAUCAGGAGAAAGU---- ..((((.......(((((.(.(((((((...((((.((((((((.((((......))))...))))))))))))..)))).))-------).).)))))......)))).....---- ( -41.02) >DroEre_CAF1 157 111 - 1 UCCUCCAGAUCCGCGUCCUCCUCGUUGUUCCUGGCCAGGUGGACCACCACGCUCUUGGUGAGGUCCGCUUGCUGUCGUAUCCG-------AACCGGAUGAAUCCAGGGGAAAGUGAAA (((((..(((...(((((...(((........(((.(((((((((((((......))))..))))))))))))........))-------)...))))).)))..)))))........ ( -37.29) >DroYak_CAF1 152 118 - 1 UCCUCCAGAUCCGCAUCCUCCUCGUUGUUUCGGGCCAGGUGGACCACUACGCUCUUGGUGAGGUCCGCUUGCUAACGUAUUCCAUUUCGUAUCCGGAUGAAAGCAGGGGAAAGUGAAA ...........(((.(((.(((.(((..((((((.((((((((((((((......))))..))))))))))...(((..........))).))))))....)))))))))..)))... ( -34.70) >DroAna_CAF1 172 92 - 1 UCCUCCAGAUCGCCAUCCUCCUCGUUGUUCCGCGCCAGAUGGACCACAAUGCUCUUGGUAAGGUCGGCUUGCUAC------AG-------GACCGG-------UAGGAGAAA------ ((((((.((((((((.......(((((((((((....).))))..))))))....))))..))))((((((...)------))-------).))))-------.))))....------ ( -25.70) >consensus UCCUCCAGAUCCGCAUCCUCCUCGUUGUUCCUGGCCAGGUGGACCACCACGCUCUUGGUGAGGUCCGCUUGCUAUUGCAACCG_______AACCGGAUGAAACCAGGAGAAAGU____ ..((((.......(((((.....(((......)))((((((((((((((......))))..)))))))))).......................)))))......))))......... (-23.93 = -25.15 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:48 2006