Locus 4252

Sequence ID 3L_DroMel_CAF1
Location 12,442,057 – 12,442,151
Length 94
Max. P 0.554968
window6578

overview

Window 8

Location 12,442,057 – 12,442,151
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 78.38
Mean single sequence MFE -33.08
Consensus MFE -16.40
Energy contribution -19.18
Covariance contribution 2.78
Combinations/Pair 1.14
Mean z-score -1.95
Structure conservation index 0.50
SVM decision value 0.04
SVM RNA-class probability 0.554968
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12442057 94 + 23771897
GGUUUACGAGUACCGUACUUUCAUAAUGGCGCCCGUUGAGGCAAACUCUUGCUCUCUCGCUCUUCUGCGCGAGAGCGGGACAACCACAUGCACA
((((.(((.(..((((.........))))..).)))..........((((((((((.(((......))).)))))))))).))))......... ( -30.90)
>DroPse_CAF1 44748 81 + 1
GGUUUUCC-GCACUGGACUUUCAUAAUGGCGGCCGUUGAGGCCGUCC--------GUCGCU----AGCGUGCGAGCGGGACAACUCUACCCUGC
((((((((-((................(((((((.....))))))).--------.((((.----.....)))))))))).))))......... ( -30.20)
>DroSec_CAF1 44777 94 + 1
GGUUUGCGAGUACCGUACUUUCAUAAUGGCGCCCGUUGAGGCAAACUCUUGCUCUCUCGCUCUUCUGCGAGAGAGCGGGACAACCAUAUGCACA
.(((((((((((...)))))...((((((...))))))..))))))((((((((((((((......)))))))))))))).............. ( -37.10)
>DroSim_CAF1 45649 94 + 1
GGUUUGCGAGUACCGUACUUUCAUAAUGGCGCCCGUUGAGGCAAACUCUUGCUCUCUCGCUCUUCUGCGAGAGAGCGGGACAACCAUAUGCACA
.(((((((((((...)))))...((((((...))))))..))))))((((((((((((((......)))))))))))))).............. ( -37.10)
>DroYak_CAF1 47402 94 + 1
GGUUUGCGAGUACCGUACUUUCAUAAUGGCGCCCGUUGAGGCAAACUCUUGCUCUCUCGCUCUGCUGUGCGAGAGCGGGACAACCAUAUGUACA
(((........)))((((.......((((.(((......)))....((((((((((.(((......))).))))))))))...))))..)))). ( -31.70)
>DroPer_CAF1 45179 81 + 1
GGUUUUCC-GCACUGGACUUUCAUAAUGGCGGCCGUUGUGGCCGUCC--------GUCGCU----AGCGUGCGAGCGGGACAACUCUACCCUGC
((((((((-((...((((..(((((((((...)))))))))..))))--------.((((.----.....)))))))))).))))......... ( -31.50)
>consensus
GGUUUGCGAGUACCGUACUUUCAUAAUGGCGCCCGUUGAGGCAAACUCUUGCUCUCUCGCUCUUCUGCGAGAGAGCGGGACAACCAUAUGCACA
((((((((.....))))...((.((((((...)))))).)).....((((((((((.(((......))).)))))))))).))))......... (-16.40 = -19.18 +   2.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:47 2006