Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,437,756 – 12,437,850 |
Length | 94 |
Max. P | 0.500000 |
Location | 12,437,756 – 12,437,850 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 83.55 |
Mean single sequence MFE | -32.00 |
Consensus MFE | -21.08 |
Energy contribution | -21.17 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.35 |
Mean z-score | -1.90 |
Structure conservation index | 0.66 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12437756 94 - 23771897 UGCCCCUGUGCGGUGACCACUCGCCACAGGGUCCGCCACCUUCGGUGCUGUUACACCCACUGCAUGGUCCUCCGGGCGGCCACCAUCACCAUCA ...(((((((((((....)).)).))))))).(((((......((((......)))).......(((....))))))))............... ( -30.90) >DroPse_CAF1 40930 94 - 1 UUCCCCUCUGCUCAGAGCACUCUCCGCAGGCACCACCCCCAUCCGUGAUACUGCACCCACUGCACGGACCACCUGGGGGCCACCAUCACCACCA ......(((((..(((....)))..))))).....((((((((((((.((.((....)).)))))))).....))))))............... ( -26.00) >DroSec_CAF1 40612 94 - 1 UGCCCCUGUGCGGUGACCACUCGCCACAGGGACCGCCGCCUUCAGUGCUGUUGCACCCACUGCAUGGUCCUCCAGGCGGCCACCAUCAUCAUCA ...(((((((((((....)).)).)))))))...(((((((..((..((((.(((.....)))))))..))..))))))).............. ( -37.60) >DroEre_CAF1 41597 94 - 1 UGCCGCUGUGCGGUGAUCACUCGCCACAGGCUCCGCCGCCUUCGGUGCUGUUGCAUCCACUGCAUGGUCCUCCGGGGGGCCACCAUCACCAUCA ....((.(((.((((...((.((((..((((......))))..))))..))..))))))).)).(((((((....)))))))............ ( -33.40) >DroYak_CAF1 42969 94 - 1 UGCCCCUGUGCGGUGAUCACUCGCCACAGGCGCCGCCGCCAUCGGUGCUGUUGCAUCCACUGCAUGGUCCGCCUGGCGGCCACCAUCACCAUCA .((.((((((((((....)).)).)))))).)).(((((((.(((.(((((.(((.....)))))))))))..))))))).............. ( -38.40) >DroPer_CAF1 41382 94 - 1 UUCCCCUCUGCUCAGAGCACUCUCCGCAGGCACCACCUCCGUCCGUGAUACUGCACCCACUGCACGGGCCACCUGGGGGCCACCAUCACCACCA .((((((((((..(((....)))..)))))..........(((((((.((.((....)).))))))))).....)))))............... ( -25.70) >consensus UGCCCCUGUGCGGUGACCACUCGCCACAGGCACCGCCGCCUUCGGUGCUGUUGCACCCACUGCAUGGUCCUCCUGGCGGCCACCAUCACCAUCA ....((((((..((((....))))))))))....(((((((...((((.............))))((....))))))))).............. (-21.08 = -21.17 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:45 2006