Locus 425

Sequence ID 3L_DroMel_CAF1
Location 1,236,521 – 1,236,613
Length 92
Max. P 0.581838
window621

overview

Window 1

Location 1,236,521 – 1,236,613
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 84.59
Mean single sequence MFE -41.83
Consensus MFE -32.81
Energy contribution -34.58
Covariance contribution 1.78
Combinations/Pair 1.10
Mean z-score -1.75
Structure conservation index 0.78
SVM decision value 0.10
SVM RNA-class probability 0.581838
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1236521 92 - 23771897
CUUGCAGCCCUUCUU---AUCCAUGGGCCCGCCGGUGGCAGUUCCGCCGCCACAGCAGGGACUGCAGGGAUCGCACGGAUCGCAGGGGUCGCAGG
(((((.((((((.(.---((((.(((((((...((((((......))))))...((((...)))).))).)).)).)))).).)))))).))))) ( -42.70)
>DroSec_CAF1 15412 92 - 1
CUUGCAGCCCUUCUU---AUCCAUGGGUCCGCCGGUGGCAGUCCCGCCGCCACAGCAGGGACUGCAGGGAUCGCACGGAUCGCAGGGGUCGCAGG
(((((.((((((.(.---((((.(((((((...((((((......))))))...((((...))))..))))).)).)))).).)))))).))))) ( -44.30)
>DroSim_CAF1 15376 92 - 1
CUUGCAGCCCUUCUU---AUCCAUGGGUCCGCCGGUUGCAGUUCCGCCGCCACAGCAGGGACUGCAAGGAUCGCACGGAUCGCAGGGGUCGCAGG
(((((.((((((.(.---((((.(((((((.....((((((((((...((....)).))))))))))))))).)).)))).).)))))).))))) ( -43.00)
>DroEre_CAF1 15626 92 - 1
CUUGCAGCCCUUCUU---GUCCAUGGGUCCCCCGGUGGCAGUUCCGCCACCACAGCAGGGACUGCAGGGAUCGCACGGAUCGCAGGGGUCACAGG
((((..((((((.(.---((((.((((((((..((((((......))))))...((((...)))).)))))).)).)))).).))))))..)))) ( -43.90)
>DroYak_CAF1 15651 92 - 1
CUUGCAGCCCUUCUU---GUCCAUGGGUCCCCCGGUGGCAGUUCCGCCACCACAGCAUGGACUGCAAGGAUCGCACUGAUCGCAGGGGUCGCAGG
(((((.(((((....---(((((((((....))((((((......))))))....)))))))(((...((((.....)))))))))))).))))) ( -41.80)
>DroAna_CAF1 13224 83 - 1
CUUGCAGCACUUGGUUGGGUUCAUGGGUCCACCGGUGGCGGUGCCGCCACCUUGGCCGCAA---CAGGGAUCA---------CAAGGAUCGCAGG
(((((....((((.(((((((...((.....))(((((((....)))))))..)))).)))---))))((((.---------....))))))))) ( -35.30)
>consensus
CUUGCAGCCCUUCUU___AUCCAUGGGUCCGCCGGUGGCAGUUCCGCCACCACAGCAGGGACUGCAGGGAUCGCACGGAUCGCAGGGGUCGCAGG
(((((.((((((......((((.(((((((...((((((......))))))...(((.....)))..))))).)).))))...)))))).))))) (-32.81 = -34.58 +   1.78) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:31 2006