Locus 4249

Sequence ID 3L_DroMel_CAF1
Location 12,437,284 – 12,437,392
Length 108
Max. P 0.844802
window6575

overview

Window 5

Location 12,437,284 – 12,437,392
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.38
Mean single sequence MFE -37.83
Consensus MFE -26.20
Energy contribution -25.40
Covariance contribution -0.80
Combinations/Pair 1.36
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.76
SVM RNA-class probability 0.844802
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12437284 108 - 23771897
UCUGG---CGGCUCAACCAUGACGGUGGACAACUCGUCAUCGGACUCGGAUGAGGAGAUCAACGUGCACGACGAUUCCGAUGGUGAAAUUGAGUCGUCGGCG---GCAACGGCG
...((---((((((((((((....)))).....((..(((((((.(((..(((.....))).((....)).))).)))))))..))..))))))))))(.((---....)).). ( -44.30)
>DroVir_CAF1 40249 97 - 1
--AGC---UAGUGCCACGGUGAACGUGGACAAUUCGUCGUCGGACUCCGAUGAGGAAAUCAAUGUGCACGACGACUCCGAUGCUGAAAUUGAGUCGCCAGUG------------
--.((---(.((((((((.....)))).....(((.(((((((...))))))).)))........))))(.((((((.(((......))))))))).)))).------------ ( -33.50)
>DroPse_CAF1 40476 99 - 1
ACGGG---CGGCUCAACCAUGACCGUGGACAACUCAUCGUCCGACUCGGAUGAAGAGAUCAACGUGCACGACGAUUCCGAUGCUGAAAUCGAAUCGCCGGC------------G
(((.(---(((.(((....)))))))......(((.(((((((...))))))).))).....)))((.((.((((((.(((......))))))))).))))------------. ( -34.90)
>DroGri_CAF1 43462 100 - 1
--GGG---CGGUGGCACUGUGAAUGUGGACAACUCCUCGUCAGAUUCGGAUGAGGAAAUCAAUGUGCACGACGAUUCCGAUGCUGAAAUUGAGUCGCCAGUG---------GCG
--.(.---((.((((........((((.(((..((((((((.......))))))))......))).))))..(((((.(((......)))))))))))).))---------.). ( -33.40)
>DroAna_CAF1 33628 114 - 1
GCUGGAGCCGGCUCAACCAUGACCGUGGACAACUCGUCGUCCGACUCGGAUGAGGAGAUCAACGUACACGACGAUUCCGAUGGUGAAAUUGAGUCGCCGGCGAUGGCGGUGGCA
(((...((((((((((...(.((((((((...(((.(((((((...))))))).)))(((..((....))..)))))).))))).)..)))))))((((....)))))))))). ( -46.00)
>DroPer_CAF1 40934 99 - 1
ACGGG---CGGCUCAACCAUGACCGUGGACAACUCAUCGUCCGACUCGGAUGAAGAGAUCAACGUGCACGACGAUUCCGAUGCUGAAAUCGAAUCGCCGGC------------G
(((.(---(((.(((....)))))))......(((.(((((((...))))))).))).....)))((.((.((((((.(((......))))))))).))))------------. ( -34.90)
>consensus
_CGGG___CGGCUCAACCAUGACCGUGGACAACUCGUCGUCCGACUCGGAUGAGGAGAUCAACGUGCACGACGAUUCCGAUGCUGAAAUUGAGUCGCCGGCG___________G
........((((...........((((.((..(((.(((((((...))))))).)))......)).))))..(((((.(((......))))))))))))............... (-26.20 = -25.40 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:44 2006