Locus 4245

Sequence ID 3L_DroMel_CAF1
Location 12,433,707 – 12,433,804
Length 97
Max. P 0.795872
window6569

overview

Window 9

Location 12,433,707 – 12,433,804
Length 97
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -20.45
Consensus MFE -16.15
Energy contribution -16.32
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.79
SVM decision value 0.60
SVM RNA-class probability 0.795872
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12433707 97 - 23771897
UAGAAGGGGUAUACGAGGCG--GGGACAGAGUGAUUUUGUCUCGUUGUCAUCUCAUUUGGAAUUGGGCGAUAAGACAAAUUUGUUUUCUUUUUUUAUAA
(((((((((...(((((..(--....)........(((((((..(((((.(((.....)))....)))))..))))))))))))...)))))))))... ( -23.60)
>DroVir_CAF1 34337 75 - 1
------------------------GACCGAGUGAUUUUGUCUCGUUGUCAUCUCAUUAGGAAUCGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
------------------------....(((..(.(((((((..(((((.(((.....)))....)))))..))))))).)..)))............. ( -16.70)
>DroGri_CAF1 38972 75 - 1
------------------------GACCGAGUGAUUUUGUCUCGUUGUCAUCUCAUUAGGAAUCGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
------------------------....(((..(.(((((((..(((((.(((.....)))....)))))..))))))).)..)))............. ( -16.70)
>DroYak_CAF1 38664 99 - 1
UAGAGGGGGUAUACGAGGCGAGGGGACAGAGUGAUUUUGUCUCGUUGUCAUCUCAUUUGGAAUUGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
..(((((......)..(((((.(((((((((...))))))))).))))).)))).........(((((((.((((((....))))))..)))))))... ( -25.30)
>DroMoj_CAF1 32387 75 - 1
------------------------GACCGAGUGAUUUUGUCUCGUUGUCAUCUCAUUAGGAAUCGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
------------------------....(((..(.(((((((..(((((.(((.....)))....)))))..))))))).)..)))............. ( -16.70)
>DroAna_CAF1 30124 90 - 1
UAAUU---CCCCCCGAGCCG--GGG----AGUGAUUUUGUCUCGUUGUCAUCUCAUUUGGAAUUGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
..(((---((((.......)--)))----)))((.(((((((..(((((.(((.....)))....)))))..))))))).))................. ( -23.70)
>consensus
________________________GACCGAGUGAUUUUGUCUCGUUGUCAUCUCAUUAGGAAUCGGGCGAUAAGACAAAUUUGUUUUCUUUGUUUAUAA
............................(((..(.(((((((..(((((.(((.....)))....)))))..))))))).)..)))............. (-16.15 = -16.32 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:39 2006