Locus 4243

Sequence ID 3L_DroMel_CAF1
Location 12,423,681 – 12,423,776
Length 95
Max. P 0.895805
window6567

overview

Window 7

Location 12,423,681 – 12,423,776
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 97.05
Mean single sequence MFE -29.72
Consensus MFE -29.30
Energy contribution -29.22
Covariance contribution -0.08
Combinations/Pair 1.07
Mean z-score -1.30
Structure conservation index 0.99
SVM decision value 0.99
SVM RNA-class probability 0.895805
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12423681 95 - 23771897
UUAAGCAAAAGUCCUUCACAACAUGGGCUUCCGGCCAAGUUGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGUCUG
.........((.((((((((.((((.(((.(((((...))))).))).))))....(((.(((....))).))).....)))))....))).)). ( -28.30)
>DroSec_CAF1 26502 95 - 1
UUAAGCAAAAGUCCUUCACAACAUGGGCUUCCGGCCAAGUUGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGGCCG
..........((((((((((.((((.(((.(((((...))))).))).))))....(((.(((....))).))).....)))))....))))).. ( -30.00)
>DroSim_CAF1 27258 95 - 1
UUAAGCAAAAGUCCUUCACAACAUGGGCUUCCGGCCAAGUUGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGGCCG
..........((((((((((.((((.(((.(((((...))))).))).))))....(((.(((....))).))).....)))))....))))).. ( -30.00)
>DroEre_CAF1 27135 95 - 1
UUAAGCAAAAGUCCUUCACAACGCGGGCUUCCGGCCAAGUCGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGGCCG
..........((((((((((..(((.(((.(((((...))))).))).).......(((.(((....))).)))...)))))))....))))).. ( -28.70)
>DroYak_CAF1 28241 95 - 1
UCAAGCAAAAGUCCUUCACAACGUGGGCUUCCGGCCAAGUCGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGGCCG
..........((((((((((.((((.(((.(((((...))))).))).))))....(((.(((....))).))).....)))))....))))).. ( -31.60)
>consensus
UUAAGCAAAAGUCCUUCACAACAUGGGCUUCCGGCCAAGUUGGUGGCGCAUGAAGAUGUGACAAAUGUGUGGCAAUAGCUGUGAAAUGGGGGCCG
..........((((((((((.((((.(((.(((((...))))).))).))))....(((.(((....))).))).....)))))....))))).. (-29.30 = -29.22 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:37 2006