Locus 4241

Sequence ID 3L_DroMel_CAF1
Location 12,418,839 – 12,418,958
Length 119
Max. P 0.650590
window6565

overview

Window 5

Location 12,418,839 – 12,418,958
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 90.65
Mean single sequence MFE -22.92
Consensus MFE -18.34
Energy contribution -18.34
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.49
Structure conservation index 0.80
SVM decision value 0.24
SVM RNA-class probability 0.650590
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12418839 119 + 23771897
CGAAUAAAAAAUCAGCCAUUGAAAACAUUGCAUUGACAUAAACAGGUGAUAGAUGCAUACACAUCAAAAUCUGUUUUUUUUUUAUUGUGCGGCAAUAAUUAUAAAUGCUUUGCGAGCAG
..(((((((((.(((...((((......((((((..(((......)))...))))))......))))...)))....))))))))).(((.((((..............))))..))). ( -21.94)
>DroSec_CAF1 21447 118 + 1
CGAAUAAAAAAUAAGCCAUUGAAAACAUUGCAUUGACAUAAACAGGUGAUAGAUGCAUACACAUCAAAAUCUGUUUUU-UUUUAUUGUGCGGCAAUAAUUAUUAAUGCUUUGCGAGCAG
...................((....((..(((((((...((((((((....((((......))))...))))))))..-..((((((.....))))))...)))))))..))....)). ( -22.00)
>DroSim_CAF1 22058 118 + 1
CGAAUAAAAAAUAAGCCAUUGAAAACAUUGCAUUGACAUAAACAGGUGAUAGAUGCAUACACAUCAAAAUCUGUUUUU-UUUUAUUGUGCGGCAAUAAUUAUAAAUGCUUUGCGAGCAG
..............(((..((....))..((((......((((((((....((((......))))...))))))))..-.......)))))))............(((((...))))). ( -21.46)
>DroEre_CAF1 22524 109 + 1
CGAAUAAAAAGUGAGCCAUUGAAAACA-----UUGACAUAAACAGGUGAUAGAUGCAUAUGCAUCAAAAUCUGUUU-----UUAUUGUCCGGCAAUAAUUAUAAAUGCUUUACGAGCAG
..............(((..((....))-----..((((.((((((((....(((((....)))))...))))))))-----....)))).)))............(((((...))))). ( -25.40)
>DroYak_CAF1 23301 110 + 1
CGAAUAAAAAUUAUGCCAUUGACAACA-----UUGACAUAAACAGGUGAUAGAUGCUCACACAUCAAAAUCUGUUU----UUUAUUGUCCGGCAAUAAUUAUAAAUGCUUUACGAGCAG
........(((((((((...(((((..-----.(((...((((((((....((((......))))...))))))))----.)))))))).))).)))))).....(((((...))))). ( -23.80)
>consensus
CGAAUAAAAAAUAAGCCAUUGAAAACAUUGCAUUGACAUAAACAGGUGAUAGAUGCAUACACAUCAAAAUCUGUUUUU_UUUUAUUGUGCGGCAAUAAUUAUAAAUGCUUUGCGAGCAG
..............(((........((......))....((((((((....((((......))))...))))))))..............)))............(((((...))))). (-18.34 = -18.34 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:35 2006