Locus 424

Sequence ID 3L_DroMel_CAF1
Location 1,231,114 – 1,231,233
Length 119
Max. P 0.533596
window620

overview

Window 0

Location 1,231,114 – 1,231,233
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.35
Mean single sequence MFE -34.04
Consensus MFE -27.88
Energy contribution -27.64
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.33
Structure conservation index 0.82
SVM decision value 0.00
SVM RNA-class probability 0.533596
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1231114 119 + 23771897
UCGUCGAAGGCGGGAAUUGUCUGCGACGAUCUCUCCAGUUCUUUUAGCAGGUCGAAGGCUUUCUCGCCGAACAUUUUUGUUUGUCGGCUCAUUGUUGAUCCUCUCU-GUUUUUCUUUGGU
((((((.(((((.....))))).)))))).....((((.......((((((((((.(((......)))(((((....))))).)))))(((....)))......))-))).....)))). ( -33.00)
>DroSec_CAF1 9965 119 + 1
UCGUCGAAGGCGGGAAUUGUCUGCGACGAUCUCUCCAGUUCCUUCAGCAGGUCGAAGGCUUUCUCGCCGAACAUUUUUGUUUGUCGGCUCAUUGUUGAUCUUUUCU-GUUUUUGUUUGGU
((((((.(((((.....))))).))))))......(((.....((((((((((((.(((......)))(((((....))))).))))))...))))))......))-)............ ( -34.80)
>DroSim_CAF1 9931 119 + 1
UCGUCGAAGGCGGGAAUUGUCUGCGACGAUCUCUCCAGUUCCUUCAGCAGGUCAAAGGCUUUCUCGCCGAACAUUUUCGUUUGUCGGCUCAUUGUUGAUCUUUUCU-GUUUUUGUUUGGU
((((((.(((((.....))))).)))))).....((((......(((.(((((((.((.....))(((((.((........)))))))......)))))))...))-).......)))). ( -30.92)
>DroEre_CAF1 10147 115 + 1
UCGUCGAAGGCGGGAAUGGUCUGCGAUGAUCUCUCCAGUUCCUUCAGAAGGUCGAAGGCUUUCUCGCCGAACAGUUUGGUUUGUCGGCUCAUUGUUGAUCUCCUCUUGUUUUUGU-----
....(((((((((((..((((.(((((((................(((((((.....))))))).(((((.(((......))))))))))))))).))))...))))))))))).----- ( -39.00)
>DroYak_CAF1 10091 115 + 1
UCGUCGAAGGCGGGAAUGGUCUGCGAUGACCUCUCCAGUUCCUUAAGAAGGUCGAAGGCUUUCUCGCCAAACAUUUUGGUUUGUCCGCUCAUUGUUGAUAUUCUCUUGUUUUUGU-----
........((((((((.(((((....((((((((..((...))..)).)))))).)))))))))))))(((((....((..((((.((.....)).))))..))..)))))....----- ( -32.50)
>consensus
UCGUCGAAGGCGGGAAUUGUCUGCGACGAUCUCUCCAGUUCCUUCAGCAGGUCGAAGGCUUUCUCGCCGAACAUUUUGGUUUGUCGGCUCAUUGUUGAUCUUCUCU_GUUUUUGUUUGGU
..(((((.((((((((..((((....((((((((..((...))..)).)))))).)))).))))))))((((......)))).)))))(((....)))...................... (-27.88 = -27.64 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:30 2006