| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,399,867 – 12,399,961 |
| Length | 94 |
| Max. P | 0.551691 |
| Location | 12,399,867 – 12,399,961 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 98.58 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -24.85 |
| Energy contribution | -27.63 |
| Covariance contribution | 2.78 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551691 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12399867 94 + 23771897 CUAUUACCACUUGGGCUGACUUGGGUGCCUUCGGGCUUGAGUAUUGCGAAUAUUGUGAGUAUUGUGAGUAUUGUGCGACUCGCAUAAUUUUCAC ....((((((.((.((..(((..(..(((....))))..)))...))...))..))).)))..(((((.((((((((...)))))))).))))) ( -28.50) >DroSec_CAF1 2505 94 + 1 CUAUUACCACUUGGGCUGACUUGGAUGCCUUCGGGCUUGAGUAUUGUGAAUAUUGUGAGUAUUGUGAGUAUUGUGCGACUCGCAUAAUUUUCAC ....((((((.(..((..(((..(..(((....))))..)))...))..)....))).)))..(((((.((((((((...)))))))).))))) ( -27.20) >DroSim_CAF1 2451 94 + 1 CUAUUACCACUUGGGCUGACUUGGGUGCCUUCGGGCUUGAGUAUUGUGAAUAUUGUGAGUAUUGUGAGUAUUGUGCGACUCGCAUAAUUUUCAC ....((((((.(..((..(((..(..(((....))))..)))...))..)....))).)))..(((((.((((((((...)))))))).))))) ( -27.20) >consensus CUAUUACCACUUGGGCUGACUUGGGUGCCUUCGGGCUUGAGUAUUGUGAAUAUUGUGAGUAUUGUGAGUAUUGUGCGACUCGCAUAAUUUUCAC ....((((((.(..((..(((..(..(((....))))..)))...))..)....))).)))..(((((.((((((((...)))))))).))))) (-24.85 = -27.63 + 2.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:28 2006