Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,394,379 – 12,394,472 |
Length | 93 |
Max. P | 0.541861 |
Location | 12,394,379 – 12,394,472 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -27.06 |
Energy contribution | -27.75 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.05 |
Mean z-score | -1.42 |
Structure conservation index | 0.76 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12394379 93 - 23771897 AAGCUGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUGCGAAUCGAUCAG--CGGCGCGGAGCG-----GCACCAGAGCGGCACCA-GAAU ...(((...(((((..(..(((((.((.((((((.((((((((.(...).)))))))).)--)))))))..)))-----))..)...)))))..))-)... ( -37.80) >DroSec_CAF1 4999 82 - 1 AAGCAGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUGCGAAUCGAUCAG--CGGCGCGGAGCG-----G-----------CACCA-GAAU ..((.....(((.((((((((.((.....)).)))((((((((.(...).))))))))..--..))))).))).-----)-----------)....-.... ( -32.30) >DroSim_CAF1 4822 82 - 1 AGGCUGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUGCGAAUCGAUCAG--CGGCGCGGAGCG-----G-----------CACCA-GAAU .((.((...(((.((((((((.((.....)).)))((((((((.(...).))))))))..--..))))).))).-----.-----------)))).-.... ( -34.40) >DroEre_CAF1 5251 92 - 1 AAGCUGAGGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUCCGAAUCGAUCAG--CGGCGCGGCGCGGAGCGGCACCGGA-----G-CG-GAAU ..(((..(((((((.((((.((((.....(((((.(((((((((....).)))))))).)--))))))))))))..))))).))..)-----)-).-.... ( -44.00) >DroYak_CAF1 5256 81 - 1 AAGCUGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUCCGAAUCGAUCAG--CGGCGCGGCGUGGA----------------A-CG-GAGU ...(((.(.((((((((((((.((.....)).)))(((((((((....).)))))))).)--).))))))).)...----------------.-))-)... ( -33.00) >DroAna_CAF1 5299 85 - 1 CUGCUGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGGCCCGAAUCGAUCAGAGCGGCCAGGAACG-----G-----------CACCAGGAAU .(((((..((((((.(..(((.((.....)).)))(((((((((....).)))))))).).)))))).....))-----)-----------))........ ( -30.90) >consensus AAGCUGAAGGCUGUGCGCGGUUGCAUGAUGCUGCCGAUCGAUUGGCUCCGAAUCGAUCAG__CGGCGCGGAGCG_____G___________CACCA_GAAU .........(((.((((((((.((.....)).)))((((((((.(...).))))))))......))))).)))............................ (-27.06 = -27.75 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:25 2006