Locus 4233

Sequence ID 3L_DroMel_CAF1
Location 12,382,341 – 12,382,431
Length 90
Max. P 0.585643
window6552

overview

Window 2

Location 12,382,341 – 12,382,431
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 84.46
Mean single sequence MFE -22.32
Consensus MFE -17.95
Energy contribution -19.32
Covariance contribution 1.37
Combinations/Pair 1.04
Mean z-score -1.50
Structure conservation index 0.80
SVM decision value 0.10
SVM RNA-class probability 0.585643
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12382341 90 + 23771897
CUUUGGCUCUGCUAUUUCUGAUUUGAUUUCUGAACUUCACAAGAUACACUACUAUCUUGUGGAUGCUGUGGCCCAAUAAAGCGGCCAGAC
.(((((((..(((..(((.((.......)).))).(((((((((((......)))))))))))................)))))))))). ( -23.70)
>DroSec_CAF1 8730 88 + 1
CUUUGGCUCUGCUAUUU--GAUUUGAUUUCUUGACUUCGCAAGAUACACUACUAUCUUGUUGAUGCUGUGGCCCAAUAAAGCGGCCAGAC
.(((((((..(((..((--(........(((((......)))))..(((...((((.....))))..)))...)))...)))))))))). ( -20.30)
>DroSim_CAF1 8731 88 + 1
CUUUGGCUUUGCUAUUU--CAUUUGAUUUGUUGACUUCGCAAGAUACACUACUAUCUUGUGGAUGCUGUGGCCCAAUAAAGCGGCCAGAC
.(((((((..(((...(--(....)).((((((..(((((((((((......))))))))))).((....)).)))))))))))))))). ( -25.50)
>DroEre_CAF1 8683 79 + 1
CUUUGGCUUUGCC------UAUUUGAUUUCUUGCAGUC--CAGAUACAC---UAUCUUGUGGAUGCUGUGGCCUAAAAGCGCGGCCAGAC
.(((((((.(((.------....((........))(((--(((...(((---......)))....))).)))......))).))))))). ( -19.80)
>consensus
CUUUGGCUCUGCUAUUU__GAUUUGAUUUCUUGACUUCGCAAGAUACACUACUAUCUUGUGGAUGCUGUGGCCCAAUAAAGCGGCCAGAC
.(((((((..(((......................(((((((((((......))))))))))).((....)).......)))))))))). (-17.95 = -19.32 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:22 2006