Locus 4230

Sequence ID 3L_DroMel_CAF1
Location 12,379,375 – 12,379,483
Length 108
Max. P 0.568998
window6549

overview

Window 9

Location 12,379,375 – 12,379,483
Length 108
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 88.21
Mean single sequence MFE -26.01
Consensus MFE -18.81
Energy contribution -18.29
Covariance contribution -0.52
Combinations/Pair 1.16
Mean z-score -1.69
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.568998
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12379375 108 - 23771897
ACAUCACUCUU-UUGCAU--UCUGCAUAAGCAAACAGCGUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUUGUUUGUCUGGCAAAUAGAGAUAGCAGUCGGUGCUAAAUU
........(((-.(((..--...))).)))...........................(((((.(..(((.(((((((.....))))))).....)))..))))))...... ( -21.20)
>DroSec_CAF1 5792 110 - 1
ACAUCACUCUU-UUGCUUUUUCUGCAUAAGCAACCAGCAUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUUGUUUGUUUGGCAAAUAGAGAUAGCAGUCGGUGCUAAAUU
......(((((-(((((......(((...((((((((......((........))......))))))))..)))......)))))).)))).(((((.....))))).... ( -27.90)
>DroSim_CAF1 5756 110 - 1
ACAUCACUCUU-UUGCUUUUUGUGCAUAAGCAACCAGCAUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUUGUUUCUUUGGCAAAUAGAGAUAGCAGUCGGUGCUAAAUU
......(((((-(((((......(((...((((((((......((........))......))))))))..)))......)))))).)))).(((((.....))))).... ( -27.90)
>DroEre_CAF1 5754 105 - 1
ACAUCACUCUUUUUGCAU--UCUGCAUGAGCAGCCUGCAUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUCGU----CUAGAAAAUACAGAUAGCAGUCGGUGCUAAAUU
.............((((.--.((((....))))..))))..................(((((.(..((((((..----............))).)))..))))))...... ( -25.64)
>DroYak_CAF1 5792 104 - 1
ACAUCGCUCUU-UUGCAU--UCUGCAUGAGCAGCCUGCAUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUCGC----UUGGGAAGCAGAGAUAGCAGUCGGUGCUUAGUU
...........-.((((.--.((((....))))..))))..................(((((.(..((((((..----(((.....))).))).)))..))))))...... ( -27.40)
>consensus
ACAUCACUCUU_UUGCAU__UCUGCAUAAGCAACCAGCAUUAUUAUUCAAUAUUACCGCACCUGGUUGCAUUGUUU_UUUGGCAAAUAGAGAUAGCAGUCGGUGCUAAAUU
.............((((.....(((....)))...))))..................(((((.(..((((((..................))).)))..))))))...... (-18.81 = -18.29 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006