Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,229,342 – 1,229,457 |
Length | 115 |
Max. P | 0.621533 |
Location | 1,229,342 – 1,229,457 |
---|---|
Length | 115 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.61 |
Mean single sequence MFE | -31.53 |
Consensus MFE | -27.52 |
Energy contribution | -27.63 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1229342 115 - 23771897 GUGCCGUGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGCUGCUUCUCUCUGUUCUCAUUGGAAAUAGUGCGAAA-AUUGGUUUUCCACGCCA---- ((((((.....))).)))((((....(((((((((((......(((((((.....((((......))))..)))))))......)))))))))))...-..))))...........---- ( -34.10) >DroEre_CAF1 9351 117 - 1 GUGCCCAGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGC---UUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAAAAUUAGUUUUCCACGCCACCCC .......((.(((.....((((.((.(((((((((((......((((((......((((...)---)))...))))))......)))))))))))...)).))))......))).))... ( -29.70) >DroYak_CAF1 9304 116 - 1 GUGACCUUUUGCGGGCACACUAUUUGCGCAUUAUUUUAAAACUGAACGGACAACUGAAGACGCUGCUUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAAUAUUAGUUUUUCACGCUA---- (((.(((.....)))))).......((((((((((((......((((((......((((......))))...))))))......))))))))))((((........))))..))..---- ( -30.80) >consensus GUGCCCUGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGCUGCUUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAA_AUUAGUUUUCCACGCCA____ ..........(((.....((((....(((((((((((......((((((......((((......))))...))))))......)))))))))))......))))......)))...... (-27.52 = -27.63 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006