Locus 423

Sequence ID 3L_DroMel_CAF1
Location 1,229,342 – 1,229,457
Length 115
Max. P 0.621533
window619

overview

Window 9

Location 1,229,342 – 1,229,457
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.61
Mean single sequence MFE -31.53
Consensus MFE -27.52
Energy contribution -27.63
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.77
Structure conservation index 0.87
SVM decision value 0.18
SVM RNA-class probability 0.621533
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1229342 115 - 23771897
GUGCCGUGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGCUGCUUCUCUCUGUUCUCAUUGGAAAUAGUGCGAAA-AUUGGUUUUCCACGCCA----
((((((.....))).)))((((....(((((((((((......(((((((.....((((......))))..)))))))......)))))))))))...-..))))...........---- ( -34.10)
>DroEre_CAF1 9351 117 - 1
GUGCCCAGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGC---UUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAAAAUUAGUUUUCCACGCCACCCC
.......((.(((.....((((.((.(((((((((((......((((((......((((...)---)))...))))))......)))))))))))...)).))))......))).))... ( -29.70)
>DroYak_CAF1 9304 116 - 1
GUGACCUUUUGCGGGCACACUAUUUGCGCAUUAUUUUAAAACUGAACGGACAACUGAAGACGCUGCUUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAAUAUUAGUUUUUCACGCUA----
(((.(((.....)))))).......((((((((((((......((((((......((((......))))...))))))......))))))))))((((........))))..))..---- ( -30.80)
>consensus
GUGCCCUGUUGCGGUCACACUAUUUGCGCAUUAUUUUAAAAUUGAACGGACAACUGAAGACGCUGCUUCUCGCUGUUCUCAUUGGAAAUAGUGCGAAA_AUUAGUUUUCCACGCCA____
..........(((.....((((....(((((((((((......((((((......((((......))))...))))))......)))))))))))......))))......)))...... (-27.52 = -27.63 +   0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:29 2006