Locus 4228

Sequence ID 3L_DroMel_CAF1
Location 12,374,027 – 12,374,144
Length 117
Max. P 0.587002
window6547

overview

Window 7

Location 12,374,027 – 12,374,144
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.00
Mean single sequence MFE -36.96
Consensus MFE -17.34
Energy contribution -17.78
Covariance contribution 0.45
Combinations/Pair 1.42
Mean z-score -1.76
Structure conservation index 0.47
SVM decision value 0.11
SVM RNA-class probability 0.587002
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12374027 117 - 23771897
--UU-AAGCACCGCUUGUCAUUUUGUUGGCAAGAAGCUGGUCCUCACAGCCACCAGGCCGCAUCGUGCCAAUGAAUUGGUGGCCGUGAACUACGGACCCAUUUUCAUCAAAAACAACUUG
--..-.(((....(((((((......)))))))..)))(((((((((.((((((((((((...)).))).......))))))).)))).....)))))...................... ( -39.01)
>DroPse_CAF1 480 119 - 1
CCCU-CAGCGUCGCCAGCUAUUUUGUGGGCAAGAAGCUGGUGCUGGCGGCCACCAAGCCGCAUCGUCCGAACGAAGUGGUCGCCGUCAACUAUGGCCCCAUCUUCACGUACACCAAUCUC
....-((((...(((((((.(((((....))))))))))))))))(((((......)))))...((.((...(((((((..(((((.....))))).))).)))).)).))......... ( -43.20)
>DroWil_CAF1 522 117 - 1
--UU-CAGCGUAGCCAGUUAUUUUGUAGGCAAAAAGCUGGUUCUAAGGACUACAAAGCCACAUCGUCCCAAUGAAGUGGUCGCUGUCAAUUAUGGACCCAUAUUCACCACCAUGCAUCUC
--..-(((((.((((((((.(((((....)))))))))))))..............(((((.((((....)))).)))))))))).....((((....)))).................. ( -29.60)
>DroMoj_CAF1 475 113 - 1
-------GCGUUGCGGGCUAUUUCGUGGGCAAAAAAUUGGUCAUGUCCGCCACCAAGCCACAUCGGCCUAACGAAAUAGUUGCCGUAAAUUAUGGACCCAUAUUCACCAAGAUGAAUUUG
-------...((((((((((((((((((((......(((((..........))))).........)))).))))))))))..))))))..((((....))))((((......)))).... ( -30.86)
>DroAna_CAF1 477 118 - 1
A-UU-CAGUGUCGCUGGCCAUUUUGUGGGCAAAAAGCUGGUGUUAACUGCCACCAAACCUCAUCGUCCGAACGAGGUGGUGGCUGUUAAUUAUGGACCGUUAUUUAUAAAAAUGAAUCUU
(-((-((....(((..((..(((((....))))).))..)))(((((.((((((..(((((.((....))..))))))))))).)))))(((((((......)))))))...)))))... ( -35.80)
>DroPer_CAF1 480 120 - 1
CCCUGCAGCGUCGCCAGCUAUUUUGUGGGCAAGAAGCUGGUGCUGGCGGCCACCAAGCCGCAUCGUCCGAACGAAGUGGUCGCCGUCAACUAUGGCCCCAUCUUCACGUACACCAAUCUC
.....((((...(((((((.(((((....))))))))))))))))(((((......)))))...((.((...(((((((..(((((.....))))).))).)))).)).))......... ( -43.30)
>consensus
__UU_CAGCGUCGCCAGCUAUUUUGUGGGCAAAAAGCUGGUGCUGACGGCCACCAAGCCGCAUCGUCCGAACGAAGUGGUCGCCGUCAACUAUGGACCCAUAUUCACCAACAUCAAUCUC
.......((..((((((((.(((((....)))))))))))))..............(((((.((((....)))).))))).))..................................... (-17.34 = -17.78 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006