| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,372,906 – 12,373,019 |
| Length | 113 |
| Max. P | 0.524106 |
| Location | 12,372,906 – 12,373,019 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 79.26 |
| Mean single sequence MFE | -28.84 |
| Consensus MFE | -17.78 |
| Energy contribution | -16.90 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.524106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12372906 113 - 23771897 UGCAGCUCCUAAAAAGUCCAUGUUUGCGCAAAGACGGGAGCAGGCAAAAUUGGGGCGUGUUACUUCUACUACGGAAAAAAACGA---GGAGCAAAUUCAACCAGUGCCCAAAGAAA ....((((((.....(((..(((....)))..))))))))).((((...(((((...((((.((((................))---))))))..)))))....))))........ ( -26.09) >DroSec_CAF1 58055 113 - 1 UGUAGCUCCUAAAAAGUCCAUGUUUGCACAAAGGCGAGAGCAGGCAAAAUUGGGACGUGUUACUUCUACUACGGCAAAAAACGA---GGAGCAAAUUCAACCAGUGCACAAAAUAA ....((((((.....((((...(((((......((....))..)))))....))))...............((........)))---)))))........................ ( -27.80) >DroSim_CAF1 61485 113 - 1 UGUAGCUCCUAAAAAGUCCAUGUUUGCCCAAAGACGAGAGCAGGCAAAAUUGGGACGUGUUACUUCUACUACAGCAAAAAACGA---GGAGCAAAUUCAACCUGUUCCCAAAGAAA ....((((((.....((((...((((((....(.(....)).))))))....))))((((.......)).))...........)---)))))........................ ( -24.90) >DroEre_CAF1 58118 112 - 1 -GUAGCUCCUAAGAAGUCUAUGUUUGCCCAAAGACGGGAGCAGGCGAAAUUGGGACGUGUUACCACCGCUACGGAAAAACCCGA---GGAGCAAAUUCAACCAGUGCUUAAAGAAA -...((((((.....((((.((......)).))))))))))((((...(((((...(((....))).(((.(((......))).---..)))........)))))))))....... ( -28.70) >DroYak_CAF1 58803 112 - 1 -CUAGCUCCUAAGAAGUCUAUGUUUGCCCAAAGACGGGAGCAAGCGAAAUUGGGACGUGUUACCUUCGCUACGGGAAAACAGGA---GGAGCCAAUUCCAGCAGUGCUCAAAGAAA -...((((((.....((((.((......)).)))))))))).((((...((((((...(((.(((((..............)))---)))))...))))))...))))........ ( -29.24) >DroAna_CAF1 53951 112 - 1 -ACAGCUCCCAAGAAGUCCAUGUUUGCUCAGAGGAGGGAACAGGCCAAAUUGGGACGAGUUACAUCUG---UAGAAAAGUCCCAACCAGAGUUGCUACAACAGGAAGCUGAAGAAA -.(((((.((.....(.((.(((((.(((....))).))))))).)...(((((((...((((....)---)))....))))))).....((((...)))).)).)))))...... ( -36.30) >consensus _GUAGCUCCUAAAAAGUCCAUGUUUGCCCAAAGACGGGAGCAGGCAAAAUUGGGACGUGUUACUUCUACUACGGAAAAAAACGA___GGAGCAAAUUCAACCAGUGCCCAAAGAAA ....(((((......((((.(((((((.(........).)))))))......)))).........((.....)).............)))))........................ (-17.78 = -16.90 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006