Locus 4226

Sequence ID 3L_DroMel_CAF1
Location 12,370,708 – 12,370,810
Length 102
Max. P 0.642181
window6545

overview

Window 5

Location 12,370,708 – 12,370,810
Length 102
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.62
Mean single sequence MFE -22.47
Consensus MFE -17.12
Energy contribution -16.90
Covariance contribution -0.22
Combinations/Pair 1.26
Mean z-score -1.05
Structure conservation index 0.76
SVM decision value 0.23
SVM RNA-class probability 0.642181
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12370708 102 - 23771897
UAUGAAUUUUCCGUUUACAGCAAUGUAGCACUUGACGGUUUCAUAAGCGGUAUCACAGCCAUCUUUUCCCUCUGAAAAGAGCUACA---UUUGAGUUUGUUC--UAA
((((((....(((((((((....))))......))))).))))))((((((......))).(((((((.....))))))))))...---.............--... ( -23.50)
>DroSec_CAF1 55853 102 - 1
UAUGAAUUUUCCGUUUACAGCGAUGUAGCACUUGACGGUUUCAUAAGCGGUUUCACAGCCAUCUUUUCCCUCUGAAAGGAGAUACA---UUUUAAUCUAUUC--AAA
((((((....(((((....((......))....))))).))))))...(((......))).........((((....)))).....---.............--... ( -20.80)
>DroSim_CAF1 59300 102 - 1
UAUGAAUUUUCCGUUUACAGCAAUGUAGCACUUGACGGUUUCAUAAGCGGUUUCACAACCAUCUUUUCCCUCUGAAAGGAGAUACA---UUUUAAUCAGUUC--GAA
((((((....(((((((((....))))......))))).))))))(((((((....)))).........((((....)))).....---.........))).--... ( -20.30)
>DroEre_CAF1 55918 107 - 1
UAUGAAUUUGCCGUUUGUAGCGAUGUAGCAUUUGACGGUUUCAUAAGCGGUAUCACAGCCAUCUUUUCCCUCUGAGAAGAGCUCCAAAUUGUGAUUUUAUUAUUAUG
((((((...((((((....((......))....))))))))))))((((((......))).(((((((.....)))))))))).......(((((......))))). ( -25.20)
>DroYak_CAF1 56614 104 - 1
UAUGAAUUUUCCGUUGACGGCGAUGUAGCACUUGACGGUUUCAUAAGCGGUAUCACAGCCAUCUUUGCCCUCUGAAAGGAGCUUCAAAAUGUGAUUUCAUU---AUA
((((((....((((..(..((......))..)..)))).))))))...((.((((((......((((..((((....))))...)))).)))))).))...---... ( -26.90)
>DroAna_CAF1 51765 103 - 1
UAUGAAUGGUUUAUUAACCACCAGAUAGCACUUUACAGUUUCAUAGGCGGUUUCACAGCCAUCCUUUCCCUCUGAAAGUAAUUCGAGAUUCACGGACAGUUC--U--
..(((((((((....))))....((....(((((.(((......(((.(((......)))..)))......))))))))...))...)))))..........--.-- ( -18.10)
>consensus
UAUGAAUUUUCCGUUUACAGCGAUGUAGCACUUGACGGUUUCAUAAGCGGUAUCACAGCCAUCUUUUCCCUCUGAAAGGAGCUACA___UUUGAAUCUAUUC__AAA
((((((....(((((....((......))....))))).))))))...(((......))).(((((((.....)))))))........................... (-17.12 = -16.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006