| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,363,438 – 12,363,551 |
| Length | 113 |
| Max. P | 0.534910 |
| Location | 12,363,438 – 12,363,551 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 90.62 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -19.63 |
| Energy contribution | -20.97 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12363438 113 - 23771897 AGAAAUUCAAUUAUAAUUGCUCUAAAAACUGCAUGUUGGAGUGAGAGUGAGCACCACUCCAAUGGUUUACGAUUAUAAAC-GCCCAAUAGUAAUCAAGCAAAAAAAAAAUCCCU ................(((((....(((((....(((((((((.(.(....).)))))))))))))))..((((((....-........)))))).)))))............. ( -21.50) >DroSec_CAF1 48417 113 - 1 AGAAAUUCAAUUAUAAUUGCUCUAAAAACUGCAUGUUGUAGUGAAAGUGAGCAACACACCAAUGGUUUACGAUUAUAAGCUGGCCAACUGUAAUCGAGCAAAAA-AGAAUCAAU .....(((.((((((.((((((.....(((((.....)))))......))))))........(((((..(........)..)))))..)))))).)))......-......... ( -21.50) >DroSim_CAF1 51841 113 - 1 AGAUAUUCAAUUAUAAUUGCUCUAAAAACUGCAUGUUGGAGUGAAAGUGAGCAACACUCCAAUGGUUUACGAUUAUAAGCUGGCCAACUGUAAUCGAGCAAAAA-AGAAGCCAU ................((((((...(((((....(((((((((...........))))))))))))))..(((((((...........)))))))))))))...-......... ( -25.40) >consensus AGAAAUUCAAUUAUAAUUGCUCUAAAAACUGCAUGUUGGAGUGAAAGUGAGCAACACUCCAAUGGUUUACGAUUAUAAGCUGGCCAACUGUAAUCGAGCAAAAA_AGAAUCCAU ................((((((...(((((....(((((((((...........))))))))))))))..(((((((...........)))))))))))))............. (-19.63 = -20.97 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:13 2006