| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,362,107 – 12,362,224 |
| Length | 117 |
| Max. P | 0.707879 |
| Location | 12,362,107 – 12,362,224 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.79 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.96 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.707879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12362107 117 + 23771897 ACAGAUACUUUCUUUGUA---UCUUCAAGAUAUUUCCUUUGUUUUCUGGUACGCAGUUUUAUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAUA ....((((.......(((---(.((((((((((...((.(((........))).))....)))))))))).)))).....((((((((..........)))))))))))).......... ( -26.40) >DroSec_CAF1 47060 115 + 1 --AGAUACUUCCUUUGUA---UCUUCAAGAUAUUUUCUUUGUUUUCUAGCACGCAGUUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUGGCAAGAGUGCUCGUAUAUUUAUGAUA --.(((((.......)))---))(((((((((....((.(((........))).)).....)))))))))((((.....(((((((((..........)))))))))......))))... ( -26.60) >DroSim_CAF1 50487 115 + 1 --GUAUACUUUCUUUGUA---UCUUCAAGAUAUUUUCUUUGUUUUCUAGUACGCAGCUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAUA --((((((.......(((---(.(((((((((....((.(((........))).)).....))))))))).)))).....((((((((..........))))))))))))))........ ( -26.80) >DroEre_CAF1 47446 120 + 1 ACAGAUUCCUUCCUUGUACAUUGUUCCAGAUUUCUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGUACAUACCCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAAAUUUUCGAUA ..............((((((.......((((.....((.(((........))).))......)))))))))).......(((((((((..........)))))))))............. ( -16.81) >DroYak_CAF1 47696 120 + 1 AUAGAUACAUUCUUUGUUUAAUGUACAAGAUUUCUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGAACAUACUCAUCGAGUAUUCAUUUUUCCAAGAGUGUUUGCACAUCUUCGAUA ...(..((((((((.(...((((..((((((.....((.(((........))).))......))))))...((((((...)))))).))))...).))))))))...)............ ( -19.80) >consensus A_AGAUACUUUCUUUGUA___UCUUCAAGAUAUUUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAUA .......................(((((((((....((.(((........))).)).....))))))))).........(((((((((..........)))))))))............. (-15.28 = -15.96 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:12 2006