| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,357,035 – 12,357,126 |
| Length | 91 |
| Max. P | 0.757537 |
| Location | 12,357,035 – 12,357,126 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 82.59 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -16.53 |
| Energy contribution | -14.90 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12357035 91 + 23771897 AAAAUGCAAACUGUUUG-GUAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAUUUCAUGUCUGAACA ............(((..-(.......(((((...((....))..)))))......(((((((.....)))))))...........)..))). ( -20.70) >DroPse_CAF1 45435 88 + 1 AUAAUGCAAACGGUUUA-GUAAUAAACCAGA---AUGGGUGUCCAUUUGGCUGCCAGGCUAAUUCUCUUAGCCCACAAUUCGCGUCGGCCCA ...((((....((((((-....)))))).((---((.((((.((....)).)))).((((((.....))))))....))))))))....... ( -25.60) >DroSim_CAF1 45161 90 + 1 -AAAUGCAAACUGUUUG-GUAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAUUUCAUGUCUGAACA -...........(((..-(.......(((((...((....))..)))))......(((((((.....)))))))...........)..))). ( -20.70) >DroEre_CAF1 42444 91 + 1 AAAAUGCAUACUGUUUG-GUAAUAAACAAGGAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAUUUCAUGUCUGAACA ....(((.((((....)-))).....(((((...((....))..))))))))...(((((((.....)))))))....((((....)))).. ( -20.30) >DroAna_CAF1 40079 89 + 1 AAAAUGCAAACUGUUUGGGUAAUAAACAAGA---AUGGAAGUCAUUUCGGCAAUCGGGCUAAUUCCUUUAGCCCACAUCUCCUGUCAGCCCA ...............(((((.....(((.((---(((...(((.....)))....(((((((.....))))))).))).)).)))..))))) ( -22.50) >DroPer_CAF1 45540 88 + 1 AUAAUGCAAACGGUUUA-GUAAUAAACCAGA---AUGGGUGUCCAUUUGGCUACCAGGCUAAUUCUCUUAGCCCACAAUUCGCGUCGGCCCA ...((((....((((((-....)))))).((---((.((((.((....)).)))).((((((.....))))))....))))))))....... ( -26.60) >consensus AAAAUGCAAACUGUUUG_GUAAUAAACAAGA___ACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUAGCCCACAUUUCAUGUCUGAACA .....((....((((((.....)))))).......(((((....)))))))....(((((((.....))))))).................. (-16.53 = -14.90 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:09 2006