Locus 422

Sequence ID 3L_DroMel_CAF1
Location 1,229,127 – 1,229,223
Length 96
Max. P 0.841580
window618

overview

Window 8

Location 1,229,127 – 1,229,223
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 92.71
Mean single sequence MFE -25.62
Consensus MFE -21.41
Energy contribution -21.98
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -1.96
Structure conservation index 0.84
SVM decision value 0.75
SVM RNA-class probability 0.841580
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1229127 96 + 23771897
CUUCUUUUGGGGCUGGCGCGACGUAUUCCCACCAGAUAUGUCCAUAUUGAUCAAUUGAAACAAUUAAUUGUGGUUUUAGCGCGUACAGUCCAAAAA
.........((((((((((((((((((.......)))))))).........(((((((.....)))))))..........)))).))))))..... ( -25.80)
>DroSec_CAF1 8957 96 + 1
CUUCUUUUGCGGCUGGCGCGACGUAUUCCCACCAGAUAUGUCCAUUUUCAUCAAUUAAAACAAUUAAUUGUGGUUUUAGCGCGUACAGUCCAAAAA
....(((((.(((((((((((((((((.......)))))))).....(((.(((((((.....)))))))))).......)))).)))))))))). ( -27.00)
>DroEre_CAF1 9137 96 + 1
CUUCUUUGGCGGCUGGCGUGACGUAUUCCCACCAGAUACGUCCAUUUUGAUCAAUUAAAAGAAUUGACUGUGGUUUUAGCGCGUACAGUCAAAAAA
..........(((((((((((((((((.......)))))))((((...(.((((((.....))))))).))))......))))).)))))...... ( -24.50)
>DroYak_CAF1 9089 96 + 1
CUUCUUGGGCGGCUGGCGUGACGUAUUCCCACCAGAUAUGUCCAUUUUGAUCAAUUAAUACAAUUGAUUGUGGUUUUAGCGCGUACAGUCCAAAAA
....((((((.....((((((((((((.......)))))))((((...((((((((.....))))))))))))......)))))...))))))... ( -25.20)
>consensus
CUUCUUUGGCGGCUGGCGCGACGUAUUCCCACCAGAUAUGUCCAUUUUGAUCAAUUAAAACAAUUAAUUGUGGUUUUAGCGCGUACAGUCCAAAAA
..........(((((((((((((((((.......)))))))((((...((((((((.....))))))))))))......))))).)))))...... (-21.41 = -21.98 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:28 2006