| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,355,068 – 12,355,164 |
| Length | 96 |
| Max. P | 0.920393 |
| Location | 12,355,068 – 12,355,164 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 92.67 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -24.65 |
| Energy contribution | -24.10 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.920393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12355068 96 - 23771897 U------GGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGAU--GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU (------((((((((((......((((((....))))))))))))..........((((.....)))).(--((.((((...)))).)))....)))))..... ( -26.50) >DroSec_CAF1 40345 96 - 1 U------GGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGAA--GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU (------((((((((((......((((((....))))))))))))......(((((.........)))))--((.((((...)))).)).....)))))..... ( -26.50) >DroSim_CAF1 43209 96 - 1 U------GGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGCU--GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU (------((((((((((......((((((....)))))))))))).........(((((.....)))))(--((.((((...)))).)))....)))))..... ( -29.80) >DroEre_CAF1 40607 101 - 1 U-GGACUGGGAACGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGAU--GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU .-....((((((((((((.((((((((((....)))))).....)))).))))).((((.....)))).(--((.((((...)))).)))..)))))))..... ( -26.10) >DroYak_CAF1 40763 102 - 1 UGGGAACGGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGAU--GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU (((((((....((((((......((((((....))))))))))))..........((((.....)))).(--((.((((...)))).)))..)))))))..... ( -31.00) >DroAna_CAF1 38340 97 - 1 U------GGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGC-UGCAAUAAAUUUGUGCACAUUCUGCACUGAGCUCGGCUCAGCUGAGCAAAGUUCCCACAAUU (------(((((((((((((...((((((....))))))..-............(((((.....)))))))))))).((((....))))...)))))))..... ( -33.00) >consensus U______GGGAGCGGGUUCAUUGAAUUAAGAUCUUAAUUGCCUGCAAUAAAUUCGUGCAAAUUCUGCGAU__GCCCAGCCCAGCUGAGCAAAGUUCCCACAAUU .......(((((((((((.((((((((((....)))))).....)))).))))).((((.....))))....((.((((...)))).))...))))))...... (-24.65 = -24.10 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:06 2006