Locus 4218

Sequence ID 3L_DroMel_CAF1
Location 12,354,022 – 12,354,114
Length 92
Max. P 0.840171
window6536

overview

Window 6

Location 12,354,022 – 12,354,114
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 88.48
Mean single sequence MFE -20.94
Consensus MFE -16.80
Energy contribution -16.72
Covariance contribution -0.08
Combinations/Pair 1.25
Mean z-score -1.77
Structure conservation index 0.80
SVM decision value 0.75
SVM RNA-class probability 0.840171
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12354022 92 - 23771897
UUUGCGUACUUUGGACUGCCGGUUGAUUGAUGGUUUGUUUGGUUUUUCAAUCGAAUACUCCUGUGUAUUUAUUCUGUAUGGCAGUAUAUUCA
..............((((((((((((..(((.(......).)))..))))))((((((......)))))).........))))))....... ( -23.00)
>DroSec_CAF1 39297 92 - 1
UUUGCGUAAUUUGAACUGCCGAUUGAUUGAUGGUUUGUUUGGUUUUUCAAGCAAAUACUCCUGUGUAUUUAUUCUGUACGGCAGUAUAUUCA
..............(((((((((.((.(((..((((((((((....))))))))))((......))..))).)).)).)))))))....... ( -22.30)
>DroSim_CAF1 42161 92 - 1
UUUGCGUAAUUUGAACUGCCGAUUGAUUGAUGGUUUGUUUGGUUUUUCAAGCAAAUACUCCUGUGUAUUUAUUCUGUAUGGCAGUAUAUUCA
..............(((((((((.((.(((..((((((((((....))))))))))((......))..))).)).)).)))))))....... ( -20.20)
>DroEre_CAF1 39587 91 - 1
UUUGCGUAAUUUA-ACUGCCGAUUGAUUGAUGGCUUAUUUGAGUUUUCAAGCGUAUGCCCCUGUGCAUUUAUUCUUUAUGGCAGUAUAUUAA
......((((...-(((((((.....((((..((((....))))..))))..((((......))))............)))))))..)))). ( -19.60)
>DroYak_CAF1 39706 92 - 1
UUUGCGUAUUUUAAACUGCCGAUUGAUUGAUGGGUUUUUUGAGUUCUCAAGCGUUUGCCCCUGUGUAUUUAUUCUGCAUGGCAGUAUAUUCA
..............((((((...........((((..(((((....))))).....))))..(((((.......)))))))))))....... ( -19.60)
>consensus
UUUGCGUAAUUUGAACUGCCGAUUGAUUGAUGGUUUGUUUGGUUUUUCAAGCGAAUACUCCUGUGUAUUUAUUCUGUAUGGCAGUAUAUUCA
..............(((((((...((.(((..((((((((((....))))))))))((......))..))).))....)))))))....... (-16.80 = -16.72 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:05 2006