Locus 4213

Sequence ID 3L_DroMel_CAF1
Location 12,338,370 – 12,338,490
Length 120
Max. P 0.517172
window6529

overview

Window 9

Location 12,338,370 – 12,338,490
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.44
Mean single sequence MFE -21.95
Consensus MFE -16.70
Energy contribution -17.45
Covariance contribution 0.75
Combinations/Pair 1.13
Mean z-score -1.44
Structure conservation index 0.76
SVM decision value -0.03
SVM RNA-class probability 0.517172
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12338370 120 - 23771897
UAUAUAAAACCCUAUUGAAAUGCAAAGCAAAAGAAAUUCCUGUGUCCUUUAUAUUUUAAUGGGCUGAGAAAUUUAUGUUUUCUAGUUCAGUGCACCUCUUCAAUGUAAAGCACUUUACUU
..........((((((((((((.((((....((......)).....)))).))))))))))))...(((((.......)))))(((..(((((....(......)....)))))..))). ( -22.30)
>DroSec_CAF1 23483 120 - 1
UAUAUAAAACCCCAUUGAAAUGCAAAGCAAAAGAAAUUCCUGUCUUCUUUAUAUUUUAAUGGGCUGAGAAAUUUAAGUUUUCUAGUUCAGUGCACCUCUUCAAUGUAAAUCACUUUACUU
..........((((((((((((.((((...((((........)))))))).))))))))))))...(((((.......)))))(((..((((.....(......).....))))..))). ( -21.70)
>DroSim_CAF1 24145 120 - 1
UAUAUAAAACCCCAUUGAAAUGCAAAGCAAAAGAAAUUCCUGUCUCCUUUAUAUUUUAAUGGUCUGAGAAAUUUAAGUUUUCUAGUUCAGUGCACCUCUUCAAUGUAAAGCACUUUACUU
...........(((((((((((.((((....((......)).....)))).)))))))))))....(((((.......)))))(((..(((((....(......)....)))))..))). ( -21.50)
>DroEre_CAF1 23643 120 - 1
UCUAUAAAAACCUAUUAAAAUGUUGUGUAAAGCAAAUUUCCGAGUCCUUUGUAUUUCAAUGGGCUGAGGAAUUUAAGUUUUCUAGUUCAGUGCACCUCUUCAAUGUAAAACACUUUACAC
........................((((((((.(((((((..(((((.(((.....))).)))))..)))))))..........(((...((((.........)))).))).)))))))) ( -22.30)
>consensus
UAUAUAAAACCCCAUUGAAAUGCAAAGCAAAAGAAAUUCCUGUCUCCUUUAUAUUUUAAUGGGCUGAGAAAUUUAAGUUUUCUAGUUCAGUGCACCUCUUCAAUGUAAAGCACUUUACUU
..........((((((((((((.((((....((......)).....)))).))))))))))))...(((((.......))))).((..(((((....(......)....)))))..)).. (-16.70 = -17.45 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:58 2006