Locus 4212

Sequence ID 3L_DroMel_CAF1
Location 12,329,806 – 12,329,896
Length 90
Max. P 0.724409
window6528

overview

Window 8

Location 12,329,806 – 12,329,896
Length 90
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 83.31
Mean single sequence MFE -27.18
Consensus MFE -17.08
Energy contribution -19.00
Covariance contribution 1.92
Combinations/Pair 1.15
Mean z-score -2.83
Structure conservation index 0.63
SVM decision value 0.41
SVM RNA-class probability 0.724409
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12329806 90 - 23771897
GCUGCUCACUCUGACAGGACUCCAUGCUGUUCUGG-----CUCGUGUUUAUUUGAUUAAAUCAAUAAAAACACUCAUAGCUCGGGGAGGCUGCUU---
((.(((..((((((((((((........))))))(-----((.((((((..(((((...)))))...))))))....))))))))).))).))..--- ( -27.50)
>DroSec_CAF1 15146 90 - 1
GCUGCUCACUCUACCAGGACUCCACGCUGUUCUGG-----CUCGUGUUUAUUUGAUUAAAUCAAUAAAAACACUCAUAGCGCGGGAAGGCUGCUU---
((.(((..(((..(((((((........)))))))-----...((((((..(((((...)))))...)))))).........)))..))).))..--- ( -25.40)
>DroSim_CAF1 15717 90 - 1
GCUGCCCACUCUGCCAGGACUCCACGCUAUUCUGG-----CUCGUGUUUAUUUGAUUAAAUCAAUAAAAACACUCAUAGCGCGGGAAGGCAGCUU---
((((((..(((.(((((((..........))))))-----)..((((((..(((((...)))))...)))))).........)))..))))))..--- ( -30.30)
>DroEre_CAF1 15469 93 - 1
GCUGCUCACUCUGCCAGGACUCCACGCUGUUCUGG-----CUCGUGUUUAUUUGAUUAAAUCAAUAAAAGCACUCUUUGCGCGGGAACCCAGCUUCCA
(((((.((....((((((((........)))))))-----)..((((((..(((((...)))))...))))))....)).))((....)))))..... ( -28.60)
>DroYak_CAF1 15475 90 - 1
GCUGCUCACUCCGCCAGGACUCCACGCUGUUCUGG-----CUCGUGUUUAUUUGAUUAAAUCAAUAAAAGCACUCAUAGCGCGGGAACGCAGCUU---
(((((....(((((((((((........)))))))-----)..((((((..(((((...)))))...))))))..........)))..)))))..--- ( -32.20)
>DroAna_CAF1 14875 84 - 1
GCUGCUCAUUUUCCC-----------CUGCUCUAGGAGCUCCCCUGUUUAUUUGAUUAAAUCAAUAAAAACACUCAUAGCGCCUGAGCACAGUUU---
((((...........-----------.(((((.(((.(((....(((((..(((((...)))))...))))).....))).))))))))))))..--- ( -19.10)
>consensus
GCUGCUCACUCUGCCAGGACUCCACGCUGUUCUGG_____CUCGUGUUUAUUUGAUUAAAUCAAUAAAAACACUCAUAGCGCGGGAACGCAGCUU___
(((((....(((((((((((........)))))).........((((((..(((((...)))))...)))))).......)))))...)))))..... (-17.08 = -19.00 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:57 2006