Locus 4210

Sequence ID 3L_DroMel_CAF1
Location 12,313,847 – 12,313,941
Length 94
Max. P 0.872307
window6525

overview

Window 5

Location 12,313,847 – 12,313,941
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 78.51
Mean single sequence MFE -35.37
Consensus MFE -25.15
Energy contribution -24.93
Covariance contribution -0.22
Combinations/Pair 1.32
Mean z-score -1.61
Structure conservation index 0.71
SVM decision value 0.88
SVM RNA-class probability 0.872307
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12313847 94 + 23771897
CUUGGAGCUCCAACUGCCGCCGCACCAGCUCCCUGCUCAGGCAAUGGCAGCAGGAGCAGGCGUCCUCCAUCGC---CACAUUCGCAUCCGCAUCGGC
...((((((((..((((((..((...(((.....)))...))..))))))..))))).((((........)))---).........)))........ ( -36.20)
>DroVir_CAF1 55318 93 + 1
CUAGGAGUCCCUGUUGGCGCCGCACUAGCUCCUGGCUCAGGCAACGGCAGCAGGAGCAAGCAUCCUCCACUGCGCGCAUUGUCGCACCUACCU----
.((((.(..(((((((.((..((.(((((.....))).))))..)).)))))))..)..(((........)))(((......))).))))...---- ( -32.20)
>DroSim_CAF1 48843 94 + 1
CUUGGAGCUCCAACUGCCGCCGCACCAGCUCCCUGCUCAGGCAAUGGCAGCAGGAGCAGGCGUCCUCCGUCGC---CAUAUUCGCAUCCGCAUCCAC
..(((((((((..((((((..((...(((.....)))...))..))))))..))))).((((.(....).)))---)......((....)).)))). ( -37.80)
>DroYak_CAF1 52590 94 + 1
CUUGAAGUUCUAGCUGCCGUCGCAGCAGCUCCCUGCUCAGGCAAUGGCAGCAGGAGCAGGCGUCCUCCGUCGC---CACAUCCGCAUCCGCAUCCGU
......(((((.((((((((.(((((((....)))))...)).)))))))).))))).((((.(....).)))---)......((....))...... ( -37.20)
>DroMoj_CAF1 48638 93 + 1
CUAGGAGUUCCUGUUGGCGCCGCACUAGUUCCUGGCUCAGGCAACGGCAGCAGGAGCAAGCAUCCUCCACCGCGCGCAUUGUCGCACCCACCU----
..(((.((((((((((.((..((.(((((.....))).))))..)).))))))))))................(((......))).....)))---- ( -30.20)
>DroAna_CAF1 45420 94 + 1
CUUGGAGUUCUAGCUGCCGUCGCACCAGCUCCCUGCUCAGGCAAUGGCAGCAGGAGCAGGCGUCCUCCGUCGC---CAAGUCCGUGGCCACGUUCUC
(((((.(((((.((((((((.((...(((.....)))...)).)))))))).))))).((((.....)))).)---))))..(((....)))..... ( -38.60)
>consensus
CUUGGAGUUCCAGCUGCCGCCGCACCAGCUCCCUGCUCAGGCAAUGGCAGCAGGAGCAGGCGUCCUCCAUCGC___CAUAUUCGCAUCCACAUCC_C
...((.(((((.(((((((..((...(((.....)))...))..))))))).)))))..(((........)))..............))........ (-25.15 = -24.93 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:52 2006