Locus 421

Sequence ID 3L_DroMel_CAF1
Location 1,226,422 – 1,226,539
Length 117
Max. P 0.560997
window617

overview

Window 7

Location 1,226,422 – 1,226,539
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -44.08
Consensus MFE -28.95
Energy contribution -29.82
Covariance contribution 0.87
Combinations/Pair 1.25
Mean z-score -2.05
Structure conservation index 0.66
SVM decision value 0.05
SVM RNA-class probability 0.560997
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1226422 117 - 23771897
---UGGUAUCCAAGACUACCAAAAGUUGGGCAUAGAAGCUUCCCAAUCCGCACAAGCGGAGCUCACCAGCCAAAUGGAGGCGGGAAUGCUUUGUCUGGACCAAGGCGUUGCCAACUGUUC
---(((((........)))))..((((((.((..((((((((((..(((((....)))))(((..(((......))).)))))))).)))))((((......))))..)))))))).... ( -43.60)
>DroSec_CAF1 6259 117 - 1
---UGGUAUCCAAGACUACCAAAAGUUGGGCAUCGAGGCUUCUCAAUCCGCACAAGCGGAGCUCACCAGCCAAAUGGAGGCGGGAAUGCUUUGUCUGGACCAAGGCGUUGCCAACUGUUC
---(((((........)))))..((((((.((.(((((((((((..(((((....)))))(((..(((......))).)))))))).)))))((((......))))).)))))))).... ( -41.00)
>DroSim_CAF1 6297 117 - 1
---UGGUAUCCAAGACUACCAAAAGUUGGGCAUCGAGGCUUCUCAAUCCGCACAAGCGGAGCUCACCAGCCAAAUGGAGGCGGGAAUGCUUUGUCUGGACCAAGGCGUUGCCAACUGUUC
---(((((........)))))..((((((.((.(((((((((((..(((((....)))))(((..(((......))).)))))))).)))))((((......))))).)))))))).... ( -41.00)
>DroEre_CAF1 6389 117 - 1
---UGGUAUCCAAGACUACCAAAAGUUGGGUAUCGAAGCUUCUCAAUCCGCACAAGCGGAGCUCAGCAGUCAAAUGGAGGCGGGAAUGCUUUGCCUGGACCAAGGCGUGGCCAACUGUUC
---(((((........)))))..((((((.(((.((((((((((..(((((....))))).....((..((....))..))))))).)))))((((......))))))).)))))).... ( -42.20)
>DroYak_CAF1 6365 117 - 1
---AGGUAUCCAAGCCUACCAAAAGUUGGGUACAGAAGCUUCUGAAUCCGCACAAGCGGAGCUCAGCAGUCAAAUGGAGGCGGGAAUGCUUUGUCUGGACCAAGGCGUUGCCAACUGUUC
---.(((......((((.(((...(((((((.((((....))))..(((((....)))))))))))).......)))))))((.(((((((((.......))))))))).)).))).... ( -42.50)
>DroMoj_CAF1 6431 120 - 1
CAACAGCAUGCAGGCCUAUGCCAUGGAGGGCUCAGUGGCUGCGCAGGCGGCACGUGACGAACUGUGUAGCCAGCUGCAGGCUGCAGUGCUGUGCGUGGAUCACGGCGUUGCCAAGUGCUC
....(((((...(((..(((((.(((.(.((.((((((((((((((.((........))..)))))))))).(((((.....))))))))).)).)...))).))))).)))..))))). ( -54.20)
>consensus
___UGGUAUCCAAGACUACCAAAAGUUGGGCAUAGAAGCUUCUCAAUCCGCACAAGCGGAGCUCACCAGCCAAAUGGAGGCGGGAAUGCUUUGUCUGGACCAAGGCGUUGCCAACUGUUC
....((((........))))...((((((.....((((((((((..(((((....)))))........(((.......)))))))).)))))((((......))))....)))))).... (-28.95 = -29.82 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:27 2006