Locus 4206

Sequence ID 3L_DroMel_CAF1
Location 12,291,185 – 12,291,280
Length 95
Max. P 0.565974
window6518

overview

Window 8

Location 12,291,185 – 12,291,280
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 80.32
Mean single sequence MFE -21.94
Consensus MFE -14.80
Energy contribution -15.20
Covariance contribution 0.40
Combinations/Pair 1.25
Mean z-score -1.59
Structure conservation index 0.67
SVM decision value 0.06
SVM RNA-class probability 0.565974
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12291185 95 - 23771897
UCUUCACUAGUCGAAAAACUUCAUCAUAAGGAUAACCAGCACACCUUAUUGUCAUUAAGGAUGACACUUAGGUGCUAGGCGCAAAGUGAGUUCAA
..((((((.(((.................((....))....(((((...(((((((...)))))))...)))))...)))....))))))..... ( -21.60)
>DroSec_CAF1 26308 95 - 1
UCUUCACUAGUCGGAAAACUUCAUCUUAAGGAUAACCAGCACACCUUAUUGUCAUCAAGGAUGAUACUUAGGUGCUAGGCGAAAAGUGAGUUCAA
..((((((..(((.........(((.....)))..(((((..((((...(((((((...)))))))...))))))).)))))..))))))..... ( -24.30)
>DroSim_CAF1 26456 95 - 1
UCUUCACUAGUCGGAAAACUUUAUCUUAUGGAUAACCAGCCCACCUUAUUGUCAUCAAGGAUGAUACUUAGGUGCUAGGCGCGAAGUGAGUUCAA
..((((((..(((.......(((((.....)))))...((((((((...(((((((...)))))))...)))))...))).)))))))))..... ( -26.70)
>DroEre_CAF1 26796 79 - 1
UGUUCCCUAGCGGCCAAACUUCAUC---------------ACACCUCAUUGUCAUCAAGGAUGAUACUUAGGUGCUA-GCGCGAAGUGAGUUCAA
...........(..(..(((((...---------------..((((.(.(((((((...))))))).).))))((..-..)))))))..)..).. ( -17.80)
>DroYak_CAF1 27738 80 - 1
UGUUCACUCGCGGGAAAACUUCAUC---------------ACACCUUACUAUCAUCAAGGAUGAUACUUUGCUGCUAAGCGCGAAGUGAGUUCAA
..(((((((((..............---------------.........(((((((...)))))))....(((....)))))).))))))..... ( -19.30)
>consensus
UCUUCACUAGUCGGAAAACUUCAUC_UA_GGAUAACCAGCACACCUUAUUGUCAUCAAGGAUGAUACUUAGGUGCUAGGCGCGAAGUGAGUUCAA
..((((((.((((((....)))...................(((((...(((((((...)))))))...)))))...)))....))))))..... (-14.80 = -15.20 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:46 2006