Locus 4205

Sequence ID 3L_DroMel_CAF1
Location 12,285,053 – 12,285,162
Length 109
Max. P 0.613566
window6517

overview

Window 7

Location 12,285,053 – 12,285,162
Length 109
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 88.30
Mean single sequence MFE -31.77
Consensus MFE -24.08
Energy contribution -23.47
Covariance contribution -0.61
Combinations/Pair 1.16
Mean z-score -2.81
Structure conservation index 0.76
SVM decision value 0.16
SVM RNA-class probability 0.613566
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12285053 109 - 23771897
AGUGUGCGUGUGUGCGUGCGUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUAGAAUACCAACGGAAUGCGUAGCAGA-ACGCAGCUCCACAAACAUA
.(((.((((((.(((.(((((....(((..(((.(((((((((((...........))))))))))).)))..)))....))))))))..-)))).))..)))....... ( -33.50)
>DroVir_CAF1 22759 101 - 1
UG--------UGUGCGUGCAUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUGAAAUACCAACGGAAUGCGUAGCGCU-GCGCAACUUAACAAACAUA
((--------(((((((((((((...((..(((.(((((((((((...........))))))))))).)))..)).))))))...)))).-))))).............. ( -29.00)
>DroGri_CAF1 21934 101 - 1
UG--------UGUGCGUGCAUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUGAAAUACCAACGGAAUGCGUAGCGCU-GCGCAACUUAACAAACAUA
((--------(((((((((((((...((..(((.(((((((((((...........))))))))))).)))..)).))))))...)))).-))))).............. ( -29.00)
>DroMoj_CAF1 22788 109 - 1
UGUGUAUGUGUGUGUGUGCAUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUGAAAUACCAACGGAAUGCGUAGCGCU-GCGCAACUUAACAAACAUA
((((((.((((.....(((((((...((..(((.(((((((((((...........))))))))))).)))..)).)))))))..)))))-))))).............. ( -29.90)
>DroAna_CAF1 17044 108 - 1
-GGGUGUGUGGGUGCGUGCGUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUAGAAUACCAACGGAAUGCGUAGCAGA-ACGCAGCUCCGCAAACAUA
-..((.((((((.((.(((((((..(((..(((.(((((((((((...........))))))))))).)))..)))...(((...)))))-))))))))))))).))... ( -35.10)
>DroPer_CAF1 24372 110 - 1
UGUGUGUGUGUGUGCGUGCGUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUAAAAUACCAACGGAAUGCGUAGCAGAAACGCAGCUCCACAAACAUA
(((((.((((.(.((.(((((((..(((..(((.(((((((((((...........))))))))))).)))..)))...(((...))).))))))))).))))).))))) ( -34.10)
>consensus
UGUGUGUGUGUGUGCGUGCAUUUAAUGUCUGUAAUUUACCGUUAAGUAGACAAGUAUUAAUGGUAAAAUACCAACGGAAUGCGUAGCACA_ACGCAACUCAACAAACAUA
.........((((..((((((((...((..(((.(((((((((((...........))))))))))).)))..)).))))))((.((......)).))...))..)))). (-24.08 = -23.47 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:45 2006