Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,283,314 – 12,283,407 |
Length | 93 |
Max. P | 0.957601 |
Location | 12,283,314 – 12,283,407 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -17.28 |
Consensus MFE | -15.65 |
Energy contribution | -15.18 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.24 |
Mean z-score | -2.28 |
Structure conservation index | 0.91 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12283314 93 - 23771897 CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUC---UUUCUUUC-UUCAUCU ..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))..........---........-....... ( -16.30) >DroGri_CAF1 20190 94 - 1 CUGCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUCCUUGCGCUUGACUGCGCCACCCA--UCCCAUA-CCCAUUU ..(((((...(((((.......)))))))))).....((((((......)))))).....((((......))))......--.......-....... ( -13.10) >DroSec_CAF1 18362 96 - 1 CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUUCUUUUUUUUUC-UUCAGCU .....(((...((((((.............((..((((.((((......))))))))...))((......))............)))))-)...))) ( -16.80) >DroEre_CAF1 18399 94 - 1 CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUUCCU--CUACUUC-UUCCUCU ..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))............--.......-....... ( -16.30) >DroWil_CAF1 29794 97 - 1 CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUCGACUGCUCCACGUUGUUGCAUUCAUUCGGUU ..((((((.......(((((....))))).((..((((.((((......))))))))...)))))))).(((..(.....)..)))........... ( -20.20) >DroAna_CAF1 15408 96 - 1 CUUGGGGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACGAUUUUUCUUGUAGUGUUUGCGCUUCGCUGCAUAUCGCUUCCAGUAUC-AGCAUGU ...(((((.......(((((....))))).((..((((.((((......))))))))...)))))))((((.((((........)))))-))).... ( -21.00) >consensus CUUCGAGCAUUAGAAAAUAAUAUUUUAUUCGCUUCACUUACAAUUUUUCUUGUAGUGUUUGCGCUUGACUGCAUCUCCCU_UUUCUUUC_UUCAUCU ..((((((.......(((((....))))).((..((((.((((......))))))))...))))))))............................. (-15.65 = -15.18 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:43 2006