Locus 4202

Sequence ID 3L_DroMel_CAF1
Location 12,275,555 – 12,275,655
Length 100
Max. P 0.842956
window6514

overview

Window 4

Location 12,275,555 – 12,275,655
Length 100
Sequences 3
Columns 100
Reading direction forward
Mean pairwise identity 72.51
Mean single sequence MFE -35.83
Consensus MFE -17.10
Energy contribution -17.33
Covariance contribution 0.23
Combinations/Pair 1.21
Mean z-score -2.49
Structure conservation index 0.48
SVM decision value 0.76
SVM RNA-class probability 0.842956
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12275555 100 + 23771897
GCCAGCAACAUGCUGAGCUAACUGGAAGGGCAACCGGAAUGGGCCAGGAACGGGAGAUGGAGAAACAUUCCCCUGCUUCUCGGGCCACACAGCAAAUCCG
((((((.....)))).)).....(((.((....))....(((.((..(((((((..(((......)))..))).).)))..)).))).........))). ( -36.10)
>DroPse_CAF1 13277 91 + 1
GCCAGCAACAUGCUGAGCCAACAGCCAGAGGAAUGAGA-UGGCUCGGCA-UGG--GAUGGCAUGAGAGCUCCCC--AAUCCGGGU---GCAGAAAAUCCG
((((....((((((((((((....(((......)).).-))))))))))-)).--..))))......((.(((.--.....))).---)).......... ( -36.90)
>DroPer_CAF1 12870 91 + 1
GCCAGCAACAUGCUGAGCCAACAGCCAGAGGAAUGAGA-UGGCUUGGCA-UGG--GAUGGCAUGAGAGCUCCCC--AAUCCGGGU---GCAGAAAAUCCG
((((....(((((..(((((....(((......)).).-)))))..)))-)).--..))))......((.(((.--.....))).---)).......... ( -34.50)
>consensus
GCCAGCAACAUGCUGAGCCAACAGCCAGAGGAAUGAGA_UGGCUCGGCA_UGG__GAUGGCAUGAGAGCUCCCC__AAUCCGGGU___GCAGAAAAUCCG
((((....(.((((((((((....(.....)........))))))))))...)....)))).........(((........)))................ (-17.10 = -17.33 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006