Locus 4201

Sequence ID 3L_DroMel_CAF1
Location 12,275,011 – 12,275,117
Length 106
Max. P 0.695824
window6513

overview

Window 3

Location 12,275,011 – 12,275,117
Length 106
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.42
Mean single sequence MFE -27.50
Consensus MFE -18.41
Energy contribution -18.38
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -2.05
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.695824
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12275011 106 + 23771897
-----ACUGC---------UAGCUACUGUUUGCAAAUGGAUCAAGGAUAUUUACCAGAGGCACGGGCUAGAUAUUCCUGAGAAAUGUAAACAGCGCCAAAUGCAAACAGUUCCAAUCAAA
-----.....---------..(..((((((((((..(((.(((.(((((((((((.(.....).)).))))))))).))).....((.....)).)))..))))))))))..)....... ( -27.60)
>DroVir_CAF1 12653 105 + 1
-----UCU-------G---UUGCUUCUGUUUGCAAAUGGAUCAAGGAUAUUUACCGAUGGCACGGGCUAGAUAUUCCUGAGAUAUGUAAACAGCACUGAAUGCAAACAGUUCAAAUCAAA
-----.((-------(---((((..(((((((((..((..(((.((((((((((((......)))..))))))))).)))..)))))))))))........)).)))))........... ( -26.60)
>DroGri_CAF1 12098 97 + 1
-----------------------UGCUGUUUGCAAAUGGAUCAAGGAUAUUUACCGGAGGCACUGGCUAGAUACUCCUGAGAUAAGUAAACAGCACAGAAUGCAAACAGUUCAAAUCAAA
-----------------------((((((((((...((..(((.(((((((((((((.....)))).)))))).))))))..)).))))))))))..((((.......))))........ ( -28.10)
>DroWil_CAF1 16686 111 + 1
UUGCUACUAC---------AACUUGAUGUUUGCAAAUGGAUCAAGGAUAUUUACCGUAGGGACGGGCUAGAUAUUCCUGAGAAAUGUAAACAGCGCAAAACGCAAACUGUUCAAAUCAAA
..........---------...((((((((((((......(((.(((((((((((((....))))..))))))))).)))....))))))).(((.....)))...........))))). ( -26.00)
>DroMoj_CAF1 12875 105 + 1
-----UCU-------G---UUGCUGUUGUUUGCCAAUGGAUCAAGGAUAUUUACCGAAGGCACGGGCUAGAUAUUCCUGAGAUAUGUAAACAGUACUGAAUGCAAACAGUUCAAAUCAAA
-----..(-------(---..((((((((((((..(((..(((.((((((((((((......)))..))))))))).)))..))))))))).(((.....))).)))))).))....... ( -24.80)
>DroAna_CAF1 8356 115 + 1
-----ACGGCUUCUGGCCGUUGCCACUGUUUGCAAAUGGAUCAAGGAUAUUUACCAGAGGCACGGGCUAGAUAUUCCUGAGAAAUGUAAACAGCGCAAAAUGCAAACAGUUCCAAUCAAA
-----(((((.....)))))((..((((((((((......(((.(((((((((((.(.....).)).))))))))).)))(...((....))...)....))))))))))..))...... ( -31.90)
>consensus
_____ACU___________UUGCUGCUGUUUGCAAAUGGAUCAAGGAUAUUUACCGGAGGCACGGGCUAGAUAUUCCUGAGAAAUGUAAACAGCACAAAAUGCAAACAGUUCAAAUCAAA
..........................((((((((......(((.(((((((((((.........)).))))))))).)))....))))))))(((.....)))................. (-18.41 = -18.38 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:41 2006