Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,226,272 – 1,226,382 |
Length | 110 |
Max. P | 0.936362 |
Location | 1,226,272 – 1,226,382 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 72.33 |
Mean single sequence MFE | -32.15 |
Consensus MFE | -13.35 |
Energy contribution | -13.72 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.43 |
Mean z-score | -2.06 |
Structure conservation index | 0.42 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863993 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1226272 110 + 23771897 UCGGUUUUCUCCU---------GCACCGCCUCAAGCUGCUGCUUGCUCUCUUGGCAAAUAAUUUCCACCUGAUUGUGGUGCACUCGAACGGAACCAACAUUCUCAUUUGUUUCCUUUUC ..((((((.((.(---------((((((((.(((((....))))).......)))..((((((.......))))))))))))...))..))))))((((........))))........ ( -26.40) >DroSec_CAF1 6109 110 + 1 UCGGUUUUCUCAU---------GCACCGCCUCGAGCUGCUGCUUGCUCUCUUGGCAAAUAAAUUCCACCUGAUGGUGGUGCCCUCGGAAGGAACCAACAUUCUCAUUUGUUUCCUUUUC ..(((((..((..---------((((((((((((((........))))...(((.((.....)))))...)).)))))))).....))..)))))((((........))))........ ( -31.90) >DroSim_CAF1 6147 110 + 1 UCGGUUUUCUCAU---------GCACCGCCUCGAGCUGCUGCUUGCUCUCUUGGCAAAUAAAUUCCACCUGAUGGUGAUGCCCUUGGACGGAACCAACAUUCUCAUUUGUUUCCUUUUC ..(((((..((..---------(((..(((..(((..((.....)).)))..)))..........((((....)))).))).....))..)))))((((........))))........ ( -27.00) >DroEre_CAF1 6239 110 + 1 UGGGUUUUCUCCU---------GAACCGCCUCCAGCUGCUGCUUGCUUUCCUGGCAAAUGAAUUCCACCUGACUGUGGUGCAGGCGAACGAAAGCAACAUUUUCAUCUGUCUCCUUCUU ..(((((......---------))))).....(((.((.((.((((((((.(.((...((....((((......))))..)).)).)..))))))))))....)).))).......... ( -24.20) >DroYak_CAF1 6215 110 + 1 UGGGUUUUCACCU---------GCACCGCCUCAAGCUGCUGCUUGCCUUCCUGGCAAAUUGAUUCCACCUGAGUGUGGUGCAGGCGAACGGAAGCAACGUUUUCAUCUGUUUCCUUUUC ......(((.(((---------(((((((((((.((....))(((((.....)))))............)))).)))))))))).))).(((((((...........)))))))..... ( -43.10) >DroMoj_CAF1 6277 114 + 1 -----UUUCUGCUGCUCGUGACGCAGCUGUUCGGCUCGCUCCUCGCUGGUCGAGCACAUCUGUCGCAUUUGCUGUUCAUGCAUGCGAACCGUUUGAAUGCUGUGAUCAGCAUGCUUGGC -----.....(((((.......)))))(((((((((.((.....)).)))))))))........(((..(((((.((((((((.(((.....))).)))).)))).))))))))..... ( -40.30) >consensus UCGGUUUUCUCCU_________GCACCGCCUCGAGCUGCUGCUUGCUCUCCUGGCAAAUAAAUUCCACCUGAUGGUGGUGCACGCGAACGGAACCAACAUUCUCAUCUGUUUCCUUUUC ......................(((((((...((((....))))(((.....)))...................)))))))...................................... (-13.35 = -13.72 + 0.37)
Location | 1,226,272 – 1,226,382 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 72.33 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -12.98 |
Energy contribution | -12.98 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.60 |
Mean z-score | -2.31 |
Structure conservation index | 0.37 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1226272 110 - 23771897 GAAAAGGAAACAAAUGAGAAUGUUGGUUCCGUUCGAGUGCACCACAAUCAGGUGGAAAUUAUUUGCCAAGAGAGCAAGCAGCAGCUUGAGGCGGUGC---------AGGAGAAAACCGA .....(....)...........((((((...(((...((((((.......((..((.....))..))....(..(((((....)))))...))))))---------)...))))))))) ( -29.80) >DroSec_CAF1 6109 110 - 1 GAAAAGGAAACAAAUGAGAAUGUUGGUUCCUUCCGAGGGCACCACCAUCAGGUGGAAUUUAUUUGCCAAGAGAGCAAGCAGCAGCUCGAGGCGGUGC---------AUGAGAAAACCGA .....(....)...........(((((((((....)))(((((.((.((.((..((.....))..))....((((........)))))))).)))))---------.......)))))) ( -32.80) >DroSim_CAF1 6147 110 - 1 GAAAAGGAAACAAAUGAGAAUGUUGGUUCCGUCCAAGGGCAUCACCAUCAGGUGGAAUUUAUUUGCCAAGAGAGCAAGCAGCAGCUCGAGGCGGUGC---------AUGAGAAAACCGA .....(....)...........((((((...((((...(((((.((.((.((..((.....))..))....((((........)))))))).)))))---------.)).)).)))))) ( -30.20) >DroEre_CAF1 6239 110 - 1 AAGAAGGAGACAGAUGAAAAUGUUGCUUUCGUUCGCCUGCACCACAGUCAGGUGGAAUUCAUUUGCCAGGAAAGCAAGCAGCAGCUGGAGGCGGUUC---------AGGAGAAAACCCA ..(((((..(((........)))..))))).(((.((((.(((.......((..((.....))..))......((.(((....)))....))))).)---------))).)))...... ( -31.20) >DroYak_CAF1 6215 110 - 1 GAAAAGGAAACAGAUGAAAACGUUGCUUCCGUUCGCCUGCACCACACUCAGGUGGAAUCAAUUUGCCAGGAAGGCAAGCAGCAGCUUGAGGCGGUGC---------AGGUGAAAACCCA .....((((...((((....))))..)))).((((((((((((.(.(((((((........((((((.....)))))).....)))))))).)))))---------)))))))...... ( -45.02) >DroMoj_CAF1 6277 114 - 1 GCCAAGCAUGCUGAUCACAGCAUUCAAACGGUUCGCAUGCAUGAACAGCAAAUGCGACAGAUGUGCUCGACCAGCGAGGAGCGAGCCGAACAGCUGCGUCACGAGCAGCAGAAA----- .....(.((((((....)))))).)...((((((((.(((((.........))))).........((((.....))))..))))))))....(((((.......))))).....----- ( -39.90) >consensus GAAAAGGAAACAAAUGAGAAUGUUGGUUCCGUUCGAGUGCACCACAAUCAGGUGGAAUUUAUUUGCCAAGAGAGCAAGCAGCAGCUCGAGGCGGUGC_________AGGAGAAAACCGA .....((((...(((......)))..))))........(((((.......((..((.....))..))....((((........)))).....)))))...................... (-12.98 = -12.98 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:26 2006