Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 172,032 – 172,152 |
Length | 120 |
Max. P | 0.629752 |
Location | 172,032 – 172,152 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.64 |
Mean single sequence MFE | -38.20 |
Consensus MFE | -34.10 |
Energy contribution | -33.73 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.89 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629752 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 172032 120 - 23771897 GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGGCUUACUUCCAUUGAAAAAAGACUGUGAGGUUAGAUGAUAAUCGGAGAACGCGAAAACGUCGCAUGUAAGCGUAUCCUGUAACUUC ..((((((((((((.(.((((.........)))))))).)))))))))............((((((((((....)))(((..((((....((((...))))..)))).)))..))))))) ( -36.00) >DroSec_CAF1 5738 120 - 1 GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAAUGUCGCAUGUAAGCGUAUCCUGUAACUUC ..(((((((((..((.(((((.........)))))))..)))))))))............((((((((((....)))(((..((((....(((...)))....)))).)))..))))))) ( -39.10) >DroSim_CAF1 5916 120 - 1 GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAAUGUCGCAUGUAAGCGUAUCCUGUAACUUC ..(((((((((..((.(((((.........)))))))..)))))))))............((((((((((....)))(((..((((....(((...)))....)))).)))..))))))) ( -39.10) >DroYak_CAF1 5947 120 - 1 GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGGUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAGAACGUCGCAUGUAAGCGUAUCCUGUAACUUC ..(((((((((..(((.((((.........)))))))..)))))))))............((((((((((....)))(((..((((....((((...))))..)))).)))..))))))) ( -38.60) >consensus GGCAGUGGAGGAGGACGCGCCAGCGGGGAAGGCGCUUUACUUCCAUUGAAAAAAGACUGUGAAGUUAGAUGAUAAUCGGAGAACGCGAAAACGUCGCAUGUAAGCGUAUCCUGUAACUUC (((.(((........)))))).((((((...(((.(((((((((..........((((....)))).(((....)))))))...((((.....))))..)))))))).))))))...... (-34.10 = -33.73 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:34 2006