| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,262,446 – 12,262,538 |
| Length | 92 |
| Max. P | 0.931327 |
| Location | 12,262,446 – 12,262,538 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 74.53 |
| Mean single sequence MFE | -18.78 |
| Consensus MFE | -11.45 |
| Energy contribution | -11.38 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12262446 92 - 23771897 AACAUCCACUCGCAAUUCGAAAAAGGUGAGUAAAGUCCGCACUGUAAUACCAGCAGUUGGUGAAACUAUUUCGAUGGGAAACCGAGGAAAAC ....(((((((((............)))))).....(((.(((((.......))))))))..............(((....))).))).... ( -20.50) >DroSec_CAF1 15938 70 - 1 AACA-----------UUCGAAAAAGGUGAGUAA-----------UACUACCAGCAGUUGGUGAAACUAUUUCGAUGGGAAACCGAGGAAAAC ....-----------.((((((..((((.....-----------...))))...((((.....)))).))))))(((....)))........ ( -15.20) >DroSim_CAF1 18376 70 - 1 AACA-----------UUCGAAAAAGGUGUGUAA-----------UAAUACCAGCAGUUGGUGAAACUAUUUCGAUGGGAAACCGAGGAAAAC ....-----------.((((((..(((((....-----------..)))))...((((.....)))).))))))(((....)))........ ( -17.70) >DroEre_CAF1 16909 91 - 1 AACUUGCGAUUGCAAGCCG-AAAAAGUGGGUAAAACCAGGACAGCAAUACCAGUAGUUAGUGAAACUAUUUCGCCGGGAAACCGAGGAAAAC ..(((((((((((...((.-......(((......)))))...))))....(((((((.....)))))))))))(((....))))))..... ( -21.71) >consensus AACA___________UUCGAAAAAGGUGAGUAA___________UAAUACCAGCAGUUGGUGAAACUAUUUCGAUGGGAAACCGAGGAAAAC ................((((((..(.((.(((...............))))).)((((.....)))).))))))(((....)))........ (-11.45 = -11.38 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:35 2006