Locus 4195

Sequence ID 3L_DroMel_CAF1
Location 12,254,429 – 12,254,549
Length 120
Max. P 0.660730
window6502

overview

Window 2

Location 12,254,429 – 12,254,549
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.56
Mean single sequence MFE -40.23
Consensus MFE -26.28
Energy contribution -25.48
Covariance contribution -0.80
Combinations/Pair 1.53
Mean z-score -2.08
Structure conservation index 0.65
SVM decision value 0.27
SVM RNA-class probability 0.660730
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12254429 120 + 23771897
GUUCCCGCUGCCGUCGCAUUUACCGCACGGUUACAUGCACACGGAUCAGUUGACUUCCGUUCUGGCUGAUGGCGCCGCCUUCCGAGGAUUUAUGGAGGCGAACAUCACAUUUCCACCCAC
((((..((.((((((((((..(((....)))...))))..(((((((....))..))))).......)))))))).((((.(((........)))))))))))................. ( -36.60)
>DroVir_CAF1 7443 120 + 1
AUUUCCGCUACCCUCGCAUUUGCCACAUGGCUACAUGCACACGGAUCAGCUCUCAUCGGUGCUGGCCGAUGGCGCUGCUUUUCGUGGCUUCAUGGAGGCAAACAUUACGUUUCCUCCCAC
......((.......((((..(((....)))...)))).((((((.((((.(.(((((((....)))))))).))))...)))))))).....(((((.((((.....)))))))))... ( -45.30)
>DroWil_CAF1 10023 120 + 1
AUUUCCAUUACCCUCGCAUUUGCCCCAUGGCUAUAUGCAUACGGAUCAGCUUACGUCGGUUCUUGCAGAUGGUGCAGCUUUUCGUGGCUUCAUGGAGGCAAAUAUAACGUUUCCACCCAC
.................(((((((((((((((((.((((...(((((.((....)).))))).)))).)))))..((((......)))).))))).)))))))................. ( -33.40)
>DroMoj_CAF1 7695 120 + 1
AUUUCCGUUACCCUCGCAUUUGCCACAUGGUUACAUGCACACGGAUCAGCUCUCGUCGGUGCUGGCCGAUGGCGCUGCCUUCCGUGGCUUCAUGGAGGCAAAUAUUACAUUUCCGCCCAC
.................(((((((.(((((......((.((((((.((((.(.(((((((....)))))))).))))...)))))))).)))))..)))))))................. ( -42.00)
>DroAna_CAF1 7253 120 + 1
GUUCCCUCUGCCUUCGCAUCUGCCGCACGGCUACAUGCACACGGAUCAGUUGUCCUCCGUGCUGGCGGACGGAGCCGCUUUUCGGGGCUUCAUGGAGGCAAACAUCACAUUUCCACCCAC
........((((((((..(((((((((((((.....))....((((.....))))..))))).)))))).((((((.(.....).)))))).)))))))).................... ( -45.40)
>DroPer_CAF1 9059 120 + 1
GUUCCCGCUUCCGUCGCACUUGCCACACGGUUACAUGCACACGGACCAACUCUCUUCUGUGCUGGCCGACGGUGCCGCCUUCCGUGGGUUCAUGGAGGCGAAUAUAACAUUUCCACCCAC
.....(((((((((.......(((.(((((......((((.(((.(((.(.(......).).))))))...))))......))))))))..))))))))).................... ( -38.70)
>consensus
AUUCCCGCUACCCUCGCAUUUGCCACACGGCUACAUGCACACGGAUCAGCUCUCGUCGGUGCUGGCCGAUGGCGCCGCCUUCCGUGGCUUCAUGGAGGCAAACAUAACAUUUCCACCCAC
((((.(((((.....((((..(((....)))...))))...(((.(((((.(......).)))))))).)))))..((((.(((((....)))))))))))))................. (-26.28 = -25.48 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:30 2006