| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,250,039 – 12,250,156 |
| Length | 117 |
| Max. P | 0.612704 |
| Location | 12,250,039 – 12,250,156 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.86 |
| Mean single sequence MFE | -20.04 |
| Consensus MFE | -13.08 |
| Energy contribution | -14.68 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12250039 117 - 23771897 UACUUACGCAUGCACAUAUAAACAAACCUAAGUCAACAAAAUGACUGUUGAUACCACAAAUCUGAGGGUUUUCAAAAU-GACAACCAGUAUUUGUUUGUAA--AACAACAAAGAAUAUAA ................((((((((((.....(((((((.......)))))))..............((((.((.....-)).))))....)))))))))).--................. ( -19.10) >DroSec_CAF1 3524 119 - 1 UACUUAUGCAUGCACAUAUAAACAAACCUAAGUCAACAAAAUGACUGUUGAUACCACAAAUCUUAGGGUUUUCAAAAA-GACAACCAGUAUUUGUUUGUAAAAAACAACAGAGAAUAUAA ..(((.((....))..((((((((((((((((((((((.......))))))..........))))))(((((....))-)))........))))))))))..........)))....... ( -19.70) >DroSim_CAF1 5950 120 - 1 UACUUAUGCAUGCAUAUAUAAACAAACCUAAGUCAACACAAUGACUGUUGAUACCACAAAUCUUUGGGUUUUCAAAAAGGACAACCAGUUUUUGUUUGUAAAAAACAACAGAGAAUAUAA ....((((....))))((((...........(((((((.......)))))))........((((((((((.((......)).)))).((((((.......))))))..)))))).)))). ( -22.10) >DroEre_CAF1 3658 117 - 1 UACGUGUGCAUGUGCAUAUAAACAAACCUAAGUCAACAUGAAGUCUGUUGAUACCACAAAUCACAAGGUUUUUAAAAA-UACAACCAGCAUAUGUAUUUAA--AAUAACGAAGAAUAUAA ..(((((((((((((................(((((((.(....))))))))..............((((........-...)))).))))))))))....--....))).......... ( -22.00) >DroYak_CAF1 3723 117 - 1 UACGUAUGCAUGUGCAUAUAAACAAACCUAAGUCAACAUGAAGUCCGUUGAUACCAAAAAUCACAAGGUUUUUAAAAA-UACAACCAGCUUAUGUAUGUAA--AACAGCGAAGAAUAUAA (((((((((....))))))................((((((.((..((((((...(((((((....)))))))....)-).))))..))))))))..))).--................. ( -17.30) >consensus UACUUAUGCAUGCACAUAUAAACAAACCUAAGUCAACAAAAUGACUGUUGAUACCACAAAUCUCAGGGUUUUCAAAAA_GACAACCAGUAUUUGUUUGUAA__AACAACAAAGAAUAUAA ................((((((((((.....(((((((.......)))))))..............((((.((......)).))))....)))))))))).................... (-13.08 = -14.68 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:27 2006