Locus 4190

Sequence ID 3L_DroMel_CAF1
Location 12,247,540 – 12,247,634
Length 94
Max. P 0.872832
window6496

overview

Window 6

Location 12,247,540 – 12,247,634
Length 94
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.85
Mean single sequence MFE -29.22
Consensus MFE -15.64
Energy contribution -17.45
Covariance contribution 1.81
Combinations/Pair 1.22
Mean z-score -2.50
Structure conservation index 0.54
SVM decision value 0.88
SVM RNA-class probability 0.872832
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12247540 94 + 23771897
CGAUGUCGUACUCGAUGAUGCGCUCAUCUGCGGAAGAUGUGCCAUGGAUUAGUG-AUGCCUUA-UUAGUGACCGUAUUAAGUGCGAUAUUGA---UUAU
((((((((((((..((((((.((.(((((.....))))).)))))((.(((.((-(((...))-))).))))).)))..)))))))))))).---.... ( -33.20)
>DroSec_CAF1 1135 94 + 1
CGAUGUCGUACUCGAUGAUGCGCUCAUCUGUGGAAGAUUUGCCAUGGAUUAGUG-AUGCCUUA-UUAGUGGACGCAUUAAGAGCGAUAUUGA---UUGU
((((((((..(((..(((((((..(((((((((........)))))))((((((-(....)))-))))))..))))))).))))))))))).---.... ( -31.00)
>DroSim_CAF1 1132 94 + 1
CGAUGUCGUACUCGAUGAUGCGCUCAUCUGCGGAAGAUGUGCCAUGGAUUAGUG-AUGCCUUA-UAUGUGACCGUAUUAAGUGCGAUAUUGA---UUAU
((((((((((((..((((((.((.(((((.....))))).)))))((.((((((-(....)))-)...))))).)))..)))))))))))).---.... ( -28.80)
>DroEre_CAF1 1174 87 + 1
CGAUGUCGUACUCGAUGAUGCGCUCAUCUGCGGAAGA-GUGCCAUGGAUUAGUG-AUGCCUC----AGUGGUCGUAUUAAAUGCGAUAU------UGAU
((((((((((.((.(((..((((((.((....)).))-))))))).))((((((-..(((..----...)))..)))))).))))))))------)).. ( -30.40)
>DroYak_CAF1 1205 93 + 1
CGAUGUCGUAUUCGAUGAUGCGCUCAUCUGCGGAAGA-GUGGCAUGGAUUAGUG-AUGCCUC----AGUGGCCGUAUUGAAUGCGAUAUUGUUAUUGAU
(((((((((((((((((((((((((.((....)).))-)).))))((.(((.((-(....))----).))))).)))))))))))))))))........ ( -34.30)
>DroPer_CAF1 768 89 + 1
CGAUAUCGUACUCAAUGAUGCGCUCAUCUGCGAAAGAUUAACCAU-UAUUAGAAUGUGCUUCAACAUGUGUACAUAUCU-AUGCGA-----A---UAGG
.(((((.((((.((.(((.((((...(((((....).........-...))))..)))).)))...)).))))))))).-......-----.---.... ( -17.60)
>consensus
CGAUGUCGUACUCGAUGAUGCGCUCAUCUGCGGAAGAUGUGCCAUGGAUUAGUG_AUGCCUCA_U_AGUGGCCGUAUUAAAUGCGAUAUUGA___UUAU
((((((((((((...(((((((.((((...(....)......(((......))).............)))).)))))))))))))))))))........ (-15.64 = -17.45 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:24 2006