Locus 419

Sequence ID 3L_DroMel_CAF1
Location 1,226,061 – 1,226,168
Length 107
Max. P 0.749035
window614

overview

Window 4

Location 1,226,061 – 1,226,168
Length 107
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 75.08
Mean single sequence MFE -37.77
Consensus MFE -25.06
Energy contribution -25.20
Covariance contribution 0.14
Combinations/Pair 1.46
Mean z-score -1.27
Structure conservation index 0.66
SVM decision value 0.47
SVM RNA-class probability 0.749035
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1226061 107 + 23771897
UGGGGCGUACGUUUUCAACUCCGACUGUUGGAAGCGUACAAGCUCUUGCUCGCAAAUUUGCAGCUGCUGCCGUUGGUGUUCAGCAUGCUCCGAGAACUGCCGGUUCG
.((((((((((((((((((.......))))))))))))).(((....(((.(((....)))))).)))...((((.....))))..)))))..((((.....)))). ( -41.40)
>DroPse_CAF1 6892 107 + 1
AGGGGCAUAGGUCUUCAGUUCGUUCUGCUGGAAGCGGAUGACGUCCUGAUCGCAAAUUUGCAGCUGUUGGCGCUGCAAGGUCUCAUGUUCUGUCGUUUGUUGCUGUA
.(((((((((..(.((((..((((((((.....)))))..)))..))))........(((((((.......))))))))..)).)))))))................ ( -34.60)
>DroEre_CAF1 6028 107 + 1
UGGGGCGUACGUUUUCAACUCCGACUGCUGGAAGCGUACAAGCUCUUGCUCGCAAAUCUGCAGUUGCUGCCGCUGCAGUGCAGCAUGCUCCUUAGAAUGCCGGUUCG
.((((((((((((((((.(.......).))))))))))).......((((.(((...(((((((.......)))))))))))))).)))))...((((....)))). ( -40.40)
>DroYak_CAF1 6004 107 + 1
GGGGGCGUACGUUUUCAACUCCGACUGUUGGAAGCGUACAAGCUCUUGUUCGCAAAUCUGCAGCUGCUGUCGUUGCAGUGCUGCAUGCUCCUUGGAAUGCCGGUUCG
(((((((((((((((((((.......)))))))))))))..((........)).....((((((.(((((....))))))))))).))))))..((((....)))). ( -43.60)
>DroAna_CAF1 5752 107 + 1
GGGCGCAUAUGUCUUUAGCUCGUUCUGCUGGAAGCGUACAAGCUCCUGUUCGCAAAUCUGUAGCUGCUGGCGCUGCAAAGCUGCAUGCUCAUUAGUCUGACGCGUCA
.(((((.((((..((((((.......))))))..))))((..((..((...(((....(((((((((.......))..)))))))))).))..))..))..))))). ( -34.10)
>DroPer_CAF1 6959 107 + 1
AGGGGCAUAGGUCUUCAGUUCGUUCUGCUGGAAGCGGAUGACGUCCUGCUCGCAAAUCUGCAGCUGUUGGCGCUGCAAGGUCUCAUGUUCUGUCGUUUGUUGCUGUA
.(((((((((..(((((((((((.((((.....)))))))).(((..(((.(((....))))))....))))))).)))..)).)))))))................ ( -32.50)
>consensus
AGGGGCAUACGUCUUCAACUCCGACUGCUGGAAGCGUACAAGCUCCUGCUCGCAAAUCUGCAGCUGCUGGCGCUGCAAUGCAGCAUGCUCCGUAGAAUGCCGCUUCA
.(((((((((((.((((((.......)))))).))))))............((....(((((((.......)))))))....))..)))))................ (-25.06 = -25.20 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:24 2006