Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,241,254 – 12,241,344 |
Length | 90 |
Max. P | 0.679437 |
Location | 12,241,254 – 12,241,344 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 70.33 |
Mean single sequence MFE | -14.88 |
Consensus MFE | -8.06 |
Energy contribution | -8.62 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -1.65 |
Structure conservation index | 0.54 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679437 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12241254 90 + 23771897 AAAACA----GAAAGAUCGUUAAUGAGGAAUAUGAAAGUGUUUUUACUAAAUACAACUUUACCAGAAUCUUUGGCAUAAAGCCAAAAUAAUACU------------ ......----.((((...((.....((((((((....)))))))).......))..)))).........((((((.....))))))........------------ ( -12.30) >DroSec_CAF1 55360 94 + 1 AAAAAAUUACGAAAGUACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAUUACAACUUUAGCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA------------ .......(((....))).(((((((((.((((......)))))))))))))..................((((((.....))))))........------------ ( -16.50) >DroSim_CAF1 57584 94 + 1 AAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAAACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA------------ .........(....).......(((.......((((((((((((.....))))).))))).))......((((((.....))))))....))).------------ ( -17.00) >DroYak_CAF1 56309 102 + 1 ACGAAAUUAAAAAG----CAAAUUGAGCAAUAUAAAAUUGUUCUUAAGGCAUAUAAGCUUAGUAACAUCUCUUACAUAAAGUUAAAAUCAUGAAUGAUGCAAUUCU ..(((........(----(.....(((((((.....))))))).....))......((...((((......))))...........((((....))))))..))). ( -13.70) >consensus AAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAUACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAUACA____________ ...........((((....((((((((.((((......))))))))))))......)))).........((((((.....)))))).................... ( -8.06 = -8.62 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006