| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,237,522 – 12,237,616 |
| Length | 94 |
| Max. P | 0.854175 |
| Location | 12,237,522 – 12,237,616 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Mean single sequence MFE | -20.92 |
| Consensus MFE | -12.57 |
| Energy contribution | -12.72 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.854175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12237522 94 - 23771897 GAAUUGCAUUGAGUGGCAAUUAUUAAAUUUACUGUAAUUGCUAGUUACAAUGCAAUUAAUCAAAUCCCCCGAAUCGAUUGAAAUCGAAA---CCACU .(((((((((((.((((((((((..........)))))))))).)..))))))))))................(((((....)))))..---..... ( -24.40) >DroSec_CAF1 51634 85 - 1 GAAUUGCAUUGAGUGGCAAUUAUUAAAUUUACUGUAAUUGCUAGUUACAAUGCAAUUAAUCAAA---------UCGAUUGAAAUCGAAA---CCGCU .(((((((((((.((((((((((..........)))))))))).)..)))))))))).......---------(((((....)))))..---..... ( -24.40) >DroSim_CAF1 53858 85 - 1 GAAUUGCGUUGAGUGGCAAUUAUUAAAUUUACUGUAAUUGCUAGUUACAAUGCAAUUAAUCAAA---------UCGAUUGAAAUCGAAA---CCGCU .(((((((((((.((((((((((..........)))))))))).)..)))))))))).......---------(((((....)))))..---..... ( -24.00) >DroEre_CAF1 56639 89 - 1 GAAU-----UGAGUGGCAAUUAUUAAAUUGUAUACAAUUGCUAGUUACGAUGCAAUUAAUUAAAUCGCUGCAUUCGAUUGAAAUCGAAA---CCGCU .(((-----((((((((((((....))))))....((((((..........)))))).............)))))))))..........---..... ( -16.10) >DroYak_CAF1 52621 89 - 1 GAAU-----UGAGUGGCAAUUAUUAAAUUUGCUGUAAUUGCUAGUUACGAUGCAAUUAAUUAAAUCCCUCGAAUCGAUUAAAAUCGAAA---CCGCU ...(-----((((.((.....(((((..((((((((((.....))))))..))))))))).....))))))).(((((....)))))..---..... ( -17.40) >DroAna_CAF1 43968 96 - 1 GAACUGAAUGGAGUGGCGAUUAUUAAAUUCACUGCAAUCGCGAAUCAGAAUGCAAUUAAUCAGAGCC-GCGAAUCGAUUGAGGCCGAAAGCACCGCU ...((.(((.(((((((((.........))..((((.((........)).))))..........)))-))...)).))).))(.(....))...... ( -19.20) >consensus GAAUUGCAUUGAGUGGCAAUUAUUAAAUUUACUGUAAUUGCUAGUUACAAUGCAAUUAAUCAAAUCC__CGAAUCGAUUGAAAUCGAAA___CCGCU .........(((.((((((((((..........)))))))))).)))..........................(((((....))))).......... (-12.57 = -12.72 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:22 2006