Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,233,114 – 12,233,212 |
Length | 98 |
Max. P | 0.901948 |
Location | 12,233,114 – 12,233,212 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -25.50 |
Consensus MFE | -19.40 |
Energy contribution | -19.06 |
Covariance contribution | -0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.25 |
Structure conservation index | 0.76 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12233114 98 - 23771897 UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAACUGACUCCUGUCGCUCUAUGAUAUGUGCAUAUGCAUUUAUU .........(((((...(((.(((.(((.....)))..(((.......)))))).))).(((....))))))))..((((.((((....)))).)))) ( -23.20) >DroSec_CAF1 47171 98 - 1 UUAAAUUCGUGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU .(((((.((((.((((.(((((((..(((....((((((((((.......)))))..)))))...))).))))))).....)))).)))).))))).. ( -27.50) >DroSim_CAF1 49338 98 - 1 UUAAAUUCGUGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU .(((((.((((.((((.(((((((..(((....((((((((((.......)))))..)))))...))).))))))).....)))).)))).))))).. ( -27.50) >DroEre_CAF1 48712 92 - 1 UUAAAUUCUAGUGCAUUGUUGAGCAAACAUUUUGCUACCAGCUGUCUCCCGGCUGAAGUGACUCCUGUCGCACAAUGAUAUGUG------CAUUUAUU ..........(..(((.(((((((((.....)))))..((((((.....))))))..(((((....))))).))))...)))..------)....... ( -26.10) >DroYak_CAF1 48085 92 - 1 UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUUCUGGCUAAAGUGACUGCUGUCGCUCAAUGAUAUGUG------CAUUUAUU ............((((.(((((((.(((.....)))..((((.(((..((......)).))).))))..))))))).....)))------)....... ( -23.20) >consensus UUAAAUUCGAGAGCAUUGUUGAGCAAACAUUUUGUUACCAGCUGUCUCCUGGCUGAAGUGACUCCUGUCGCUCAAUGAUAUGUGCAUAUGCAUUUAUU ..........((((.......(((((.....)))))..((((((.....))))))....(((....)))))))...((((.((((....)))).)))) (-19.40 = -19.06 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:21 2006