Locus 4186

Sequence ID 3L_DroMel_CAF1
Location 12,232,866 – 12,232,966
Length 100
Max. P 0.795589
window6492

overview

Window 2

Location 12,232,866 – 12,232,966
Length 100
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 82.65
Mean single sequence MFE -29.04
Consensus MFE -21.68
Energy contribution -21.40
Covariance contribution -0.28
Combinations/Pair 1.15
Mean z-score -1.85
Structure conservation index 0.75
SVM decision value 0.60
SVM RNA-class probability 0.795589
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12232866 100 + 23771897
-ACCCAUAUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCU----------------CUAUCGUAAUAUCGCACUAUCGCAAUAUC
-......((((.(((((((.(((((((((........)))))..((((((((..(((((....))))).)))----------------.)))))......))))))))))).)))). ( -31.80)
>DroSec_CAF1 46961 92 + 1
-ACCCAUAUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCGCUGCCGAUAAGCAUGGUGUUUAUACACUCGCU----------------CUAUCGCAAAA--------UCGCAGUAUC
-((((((........))))))((((.((((((....((((((.......)))..(((((....))))).)))----------------..))))))...--------))))...... ( -29.90)
>DroSim_CAF1 49107 92 + 1
-ACCCAUAUAUCGUGGUGGGUGUGGGUGCCAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCU----------------CUAUCGCAAAA--------UCGCAAUAUC
-((((((........))))))((((((((........))))(((.(((((((..(((((....))))).)))----------------.)))))))...--------))))...... ( -27.60)
>DroEre_CAF1 48482 92 + 1
-AUACAUAUAUCGCAGUGGGUGUGGGUGCGAUUAUAAGCACUGUCGAUAAGCAUGGUGCUUAUACACACGCU----------------GUAUCGCAAUA--------UCGGAAUAUC
-...........((((((.((((.(((((........)))))....((((((.....)))))))))).))))----------------)).........--------.......... ( -25.60)
>DroYak_CAF1 47829 109 + 1
CAUACAUAUAUCGUGGUGGGUGUGGGUGCGAUUAUAAGCACUGCCGAUAAGCAUGCUGUUUAUACACUCGCUAUAUCGCUGUAUCGCAGUAUCGCAAUA--------UCGAAAUAUC
.....((((.(((((((((((((.(((((........)))))....((((((.....)))))))))))))))))...((((.....)))).........--------..)).)))). ( -30.30)
>consensus
_ACCCAUAUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCU________________CUAUCGCAAUA________UCGCAAUAUC
..............(((((((((.(((((........)))))....((((((.....)))))))))))))))............................................. (-21.68 = -21.40 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:20 2006