Locus 4184

Sequence ID 3L_DroMel_CAF1
Location 12,217,115 – 12,217,219
Length 104
Max. P 0.936271
window6490

overview

Window 0

Location 12,217,115 – 12,217,219
Length 104
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 91.94
Mean single sequence MFE -21.02
Consensus MFE -18.69
Energy contribution -18.69
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.89
SVM decision value 1.25
SVM RNA-class probability 0.936271
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12217115 104 - 23771897
UCCAAAUCUAAAACAAACAA-----CCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCCAA-----GACGAGUUCAACUGAACUCGGCUCUUUCAAGGCGAAACAUU
....................-----((...(((((.......)))))..(((((..(((.........-----)))((((((....)))))))))))......))......... ( -21.20)
>DroSec_CAF1 31431 93 - 1
UCCAAAUCUAAAACAAACAA-----CCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCC----------------AACUGAACUCGGCUCUUUCAAGGCGAAACAUU
....................-----((...(((((.......)))))..((((((((((.......----------------.....))))))))))......))......... ( -20.00)
>DroSim_CAF1 31963 104 - 1
UCCAAAUCUAAAACAAACAA-----CCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCCAG-----GACGAGUUCAACUGAACUCGGCUCUUUCAAGGCGAAACAUU
....................-----((...(((((.......)))))..(((((..(((.........-----)))((((((....)))))))))))......))......... ( -21.30)
>DroEre_CAF1 32388 104 - 1
UCCAAAUCUAAAACAAACAA-----CCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCCAA-----GACGAGUUCAACUGAACUCGGCUCUUUCAAGGCGAAACAUU
....................-----((...(((((.......)))))..(((((..(((.........-----)))((((((....)))))))))))......))......... ( -21.20)
>DroYak_CAF1 31633 114 - 1
UCCAAAUCUAAAACAAACAACCCAACCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCCAAGACAAGACGAGUUCAACUGAACUCGGCUCUUUCAAGGCGAAACAUU
....................(((.......(((((.......)))))..(((((..(((.........))).....((((((....)))))))))))......)).)....... ( -21.40)
>consensus
UCCAAAUCUAAAACAAACAA_____CCGAACUGAGCUGCAUUCUCAGAUGAGUCGAGUUAAAACCCAA_____GACGAGUUCAACUGAACUCGGCUCUUUCAAGGCGAAACAUU
.........................((...(((((.......)))))..((((((((((............................))))))))))......))......... (-18.69 = -18.69 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:18 2006