Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,216,930 – 12,217,024 |
Length | 94 |
Max. P | 0.546331 |
Location | 12,216,930 – 12,217,024 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -12.17 |
Consensus MFE | -11.33 |
Energy contribution | -11.50 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.93 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546331 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12216930 94 + 23771897 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUCUCGU-UCUU---UUUUUGCAAUCCGUUUUUCUUCUUUUGGU--C .((((((...........))))))....(((((((.....))))).))............-....---.............................--. ( -12.30) >DroSec_CAF1 31251 89 + 1 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACA------UUUUUUU---UUUUUGCAAUCCGUUUUUCUUCUUUUGGC--C .((((((...........))))))....(((((((.....))))).))....------.......---.............................--. ( -12.30) >DroSim_CAF1 31777 95 + 1 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACUCUCCUCUUUUUUU---UUUUUGCAAUUCGUUUUUCUUCUUUUGGC--C .((((((...........))))))....(((((((.....))))).)).................---.............................--. ( -12.30) >DroEre_CAF1 32210 88 + 1 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCAUCUAGACGUCGCUACUCUUUUUUU----------UUUGCAAUCCGUUCUUCUUCUUUUGGU--C .((((((...........))))))....(((((((.....))))).))............----------...........................--. ( -12.10) >DroYak_CAF1 31437 98 + 1 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUUUUUUUUUCUUCGUUUUUGCAAUCCGUUUUUCUUCUUUUGGU--C .((((((...........))))))....(((((((.....))))).)).................................................--. ( -12.30) >DroAna_CAF1 26863 95 + 1 AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACAUCGCUACUUUGCUCCU-U-UC---CUCAUCCAUUCCGUUUUUGUCUUUUUUGUCCC ....................(((((((.((..(((.....)))...))...)))))))..-.-..---................................ ( -11.70) >consensus AGUUCAAUUCAUUUCCACUUGAGCAAAUGCACGUCUUCUAGACGUCGCUACACUUCUCUU_UUUU___UUUUUGCAAUCCGUUUUUCUUCUUUUGGU__C .((((((...........))))))....(((((((.....))))).)).................................................... (-11.33 = -11.50 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:17 2006