Locus 4180

Sequence ID 3L_DroMel_CAF1
Location 12,205,565 – 12,205,657
Length 92
Max. P 0.704289
window6484

overview

Window 4

Location 12,205,565 – 12,205,657
Length 92
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 81.89
Mean single sequence MFE -33.23
Consensus MFE -14.56
Energy contribution -16.07
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -3.20
Structure conservation index 0.44
SVM decision value 0.36
SVM RNA-class probability 0.704289
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12205565 92 - 23771897
CCAUUUUGGGCGAC--CCAAAAGGACUUGGACUGCUUCAACUCUUGAUUUGAG-UUUGGCAAUUAGCGAUGGCUUUUCGUCCUUUUGGCCCGUCC
.......(((((..--((((((((((......((((..(((((.......)))-)).))))...(((....)))....))))))))))..))))) ( -33.60)
>DroPse_CAF1 19849 84 - 1
UCCUUUGGGGCGGGGGUUGGGAUGGCUUA--UCGC-CCAGCGCUUGAUGGGGCUUUUGGCAAUUACCGAAGC---UUCG-ACUUUUGGCCC----
.......(((((((.((((((.(((....--))))-))))).)))..(((((((((.((......)))))))---))))-.......))))---- ( -30.20)
>DroSec_CAF1 19889 90 - 1
CCAUUUUGGGCGAC--CCAAAAGGACUCG--CUGCUUCAGCUCUUGAUUUGAG-UUUGGCAAUUAGCGAAGGCUUUUCGUCCUUUUGGCCCGUCC
.......(((((..--((((((((((...--.((((..(((((.......)))-)).))))...(((....)))....))))))))))..))))) ( -36.10)
>DroSim_CAF1 20274 90 - 1
CCAUUUUGGGCGAC--CCAAAAGGACUCG--CUGCUUCAGCUCUUGAUUUGAG-UUUGGCAAUUAGCGAAGGCUUUUCGUCCUUUUGGCCCGUCC
.......(((((..--((((((((((...--.((((..(((((.......)))-)).))))...(((....)))....))))))))))..))))) ( -36.10)
>DroEre_CAF1 20435 90 - 1
CCAUUUUGGGCGAC--CCAAAAGGGCUUG--CUGCUCCAACUCUUGAUUUGAG-UUUGGCAAUUAGCGAAGGCUUUUCUGCCUUUUAGCCCGUCC
...(((((((...)--))))))(((((.(--(((..(((((((.......)))-.))))....))))((((((......)))))).))))).... ( -32.80)
>DroYak_CAF1 20245 90 - 1
CCAUUUUGGUCGAC--CCAAAAGGGCUUG--CUGCUCCAACUCUUGAUUUGAG-UUUGGCAAUUAGCGAAGGCUUCUCGGCCUUUUAGCCCGUCC
...((((((.....--))))))(((((.(--(((..(((((((.......)))-.))))....))))(((((((....))))))).))))).... ( -30.60)
>consensus
CCAUUUUGGGCGAC__CCAAAAGGACUUG__CUGCUCCAACUCUUGAUUUGAG_UUUGGCAAUUAGCGAAGGCUUUUCGUCCUUUUGGCCCGUCC
.......((((......(((((((........((((....(((.......)))....))))...(((....)))......))))))))))).... (-14.56 = -16.07 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:13 2006