Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,220,881 – 1,220,971 |
Length | 90 |
Max. P | 0.624005 |
Location | 1,220,881 – 1,220,971 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -30.57 |
Consensus MFE | -21.21 |
Energy contribution | -20.18 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.40 |
Mean z-score | -1.33 |
Structure conservation index | 0.69 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624005 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1220881 90 - 23771897 GAUACGGUGGAAGUUUUCCACCUCUAGGAGGAG------GCUUCGGCUAUGACGAGAAAUCGCCAGCUGUGGCCGAUGGUAAGAGUGCUAAGAGUG ..(((((((((.....))))))(((.......(------(((.(((((..(.(((....)))).))))).))))..(((((....))))))))))) ( -30.00) >DroSec_CAF1 780 87 - 1 GAUACGGCGGAAGUUUUCCACCUCUAGG---AG------GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG .....((((((.....))).((((...)---))------)(((((((((((.(((....))).....)))))))))))........)))....... ( -28.10) >DroSim_CAF1 802 87 - 1 GAUACGGCGGAAGCUUUCCACCUCUAGG---AG------GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG ..((((((....))).....((((...)---))------)(((((((((((.(((....))).....))))))))))))))............... ( -28.80) >DroEre_CAF1 813 87 - 1 GAUACGGCGGCAGUUUUCCACCGCUAGG---UG------GCUUCGGCUACGAUGAGAAAUCGCCAGCUGUGGCCGAGGGCAAAAGCGCUAAGAGUG ....((((.((((((..(((((....))---))------)....(((...(((.....)))))))))))).))))((.((....)).))....... ( -33.30) >DroYak_CAF1 786 93 - 1 GAUAUGGCGGCAGUUAUCCACCUCUAGG---AGGCGGAGGCAUCGGUUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAACGCCAAGAGUG ....((((.((((((.(((.((((...)---))).)))(((.(((....))).((....))))))))))).))))..(((......)))....... ( -36.40) >DroMoj_CAF1 679 78 - 1 GAUUUGGUGGCAACUA------------UGCGG------GUUUCGGCUAUGACGAGAAGUCGCCCGCCGUGGCCGAGGGCAAGAAUGCCAAAAGUG ..((((((.(((....------------))).(------.(((((((((((.((.(......).)).))))))))))).)......)))))).... ( -26.80) >consensus GAUACGGCGGAAGUUUUCCACCUCUAGG___AG______GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG .....((((...........((....))............(((((((((((.(((....))).....))))))))))).......))))....... (-21.21 = -20.18 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:23 2006