Locus 418

Sequence ID 3L_DroMel_CAF1
Location 1,220,881 – 1,220,971
Length 90
Max. P 0.624005
window613

overview

Window 3

Location 1,220,881 – 1,220,971
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.18
Mean single sequence MFE -30.57
Consensus MFE -21.21
Energy contribution -20.18
Covariance contribution -1.02
Combinations/Pair 1.40
Mean z-score -1.33
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.624005
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1220881 90 - 23771897
GAUACGGUGGAAGUUUUCCACCUCUAGGAGGAG------GCUUCGGCUAUGACGAGAAAUCGCCAGCUGUGGCCGAUGGUAAGAGUGCUAAGAGUG
..(((((((((.....))))))(((.......(------(((.(((((..(.(((....)))).))))).))))..(((((....))))))))))) ( -30.00)
>DroSec_CAF1 780 87 - 1
GAUACGGCGGAAGUUUUCCACCUCUAGG---AG------GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG
.....((((((.....))).((((...)---))------)(((((((((((.(((....))).....)))))))))))........)))....... ( -28.10)
>DroSim_CAF1 802 87 - 1
GAUACGGCGGAAGCUUUCCACCUCUAGG---AG------GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG
..((((((....))).....((((...)---))------)(((((((((((.(((....))).....))))))))))))))............... ( -28.80)
>DroEre_CAF1 813 87 - 1
GAUACGGCGGCAGUUUUCCACCGCUAGG---UG------GCUUCGGCUACGAUGAGAAAUCGCCAGCUGUGGCCGAGGGCAAAAGCGCUAAGAGUG
....((((.((((((..(((((....))---))------)....(((...(((.....)))))))))))).))))((.((....)).))....... ( -33.30)
>DroYak_CAF1 786 93 - 1
GAUAUGGCGGCAGUUAUCCACCUCUAGG---AGGCGGAGGCAUCGGUUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAACGCCAAGAGUG
....((((.((((((.(((.((((...)---))).)))(((.(((....))).((....))))))))))).))))..(((......)))....... ( -36.40)
>DroMoj_CAF1 679 78 - 1
GAUUUGGUGGCAACUA------------UGCGG------GUUUCGGCUAUGACGAGAAGUCGCCCGCCGUGGCCGAGGGCAAGAAUGCCAAAAGUG
..((((((.(((....------------))).(------.(((((((((((.((.(......).)).))))))))))).)......)))))).... ( -26.80)
>consensus
GAUACGGCGGAAGUUUUCCACCUCUAGG___AG______GCUUCGGCUACGACGAGAAAUCGCCAGCUGUGGCCGAGGGUAAGAGUGCUAAGAGUG
.....((((...........((....))............(((((((((((.(((....))).....))))))))))).......))))....... (-21.21 = -20.18 +  -1.02) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:23 2006