Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,204,017 – 12,204,116 |
Length | 99 |
Max. P | 0.648178 |
Location | 12,204,017 – 12,204,116 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.74 |
Mean single sequence MFE | -17.88 |
Consensus MFE | -11.00 |
Energy contribution | -11.40 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.15 |
Mean z-score | -1.65 |
Structure conservation index | 0.62 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648178 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12204017 99 - 23771897 GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUU--------UUUUUGCAGAAAAAUGCAGAGAGGAAAAUAGUUAUUGGAAUUAUAUUUUUUUUA (((((.....)))))...............(((...(((((((((--------((((((((......)))))))))))))))))....)))................ ( -25.10) >DroSec_CAF1 18381 85 - 1 GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUUA------AUUUUGCAGAAAAAUGCAGAGAGAAAUAUA---------------U-UUGUUUG (((((.....)))))......................((((((((..------..((((((......))))))))))))))..---------------.-....... ( -14.80) >DroSim_CAF1 18759 85 - 1 GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUAA------UUUUUGCAGAAAAAUGCAGAGAGAAAUAUA---------------U-UUGUUUG (((((.....)))))......................((((((((..------..((((((......))))))))))))))..---------------.-....... ( -14.80) >DroEre_CAF1 18870 106 - 1 GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUUUCCUUUUUUUUAUGUAGAAAAAUGCAGAGAGGAAAAUAGUAAUGGGAAUCAUAU-UUAUUUA (((((.....)))))..............((((...(((((((((((((.((((((.....))))))...)).)))))))))))...))))........-....... ( -22.40) >DroYak_CAF1 18699 93 - 1 GCUUGUUCUACAAGUAACUUCAACCUUACCCCACCU-------------UUUUUUAAUGUAGAAAAAUGCAGAGAGGAAAAUAGUAAUUGGAAUUAUAU-UUACUUA (((((.....)))))...(((((..((((....(((-------------(((.....((((......))))))))))......))))))))).......-....... ( -12.30) >consensus GCUUGUUCUACAAGCAACUUCAACCUUACCCCACCUUUGUUUUUU________UUUUUGCAGAAAAAUGCAGAGAGGAAAAUAGU_AU_GGAAU_AUAU_UUAUUUA (((((.....)))))......................................((((((((......))))))))................................ (-11.00 = -11.40 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:12 2006