Locus 4175

Sequence ID 3L_DroMel_CAF1
Location 12,187,370 – 12,187,468
Length 98
Max. P 0.524951
window6478

overview

Window 8

Location 12,187,370 – 12,187,468
Length 98
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -15.69
Consensus MFE -11.34
Energy contribution -11.15
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.37
Structure conservation index 0.72
SVM decision value -0.02
SVM RNA-class probability 0.524951
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12187370 98 - 23771897
ACUUGAAAAUGACCUUUAC--------------ACAAUAUAAAACUGCUCUUUUCAACAGCUCAAGGGAUCCUUCUCCUCCAAAGGCGGUCCACGCACCCAAAAUCCCUAUU
..(((((((.((.(.....--------------.............).))))))))).......((((((.(((........)))(((.....))).......))))))... ( -14.17)
>DroSec_CAF1 1807 84 - 1
--------------UUUAC--------------ACAAUUGAAAUCUGCUCUCUUCGACAGCUCAAGGGAUCCUUCUCCUCCAAAGGCGGUCCACGCACCCAAAAUCCCUAUU
--------------.....--------------.....(((...(((.((.....))))).)))((((((.(((........)))(((.....))).......))))))... ( -13.90)
>DroSim_CAF1 1792 84 - 1
--------------UUUAC--------------ACAAUUGAAAUCUGCUCUCUUCGACAGCUCAAGGGAUCCUUCUCCUCCAAAGGCGGUCCACGCACCCAAAAUCCCUAUU
--------------.....--------------.....(((...(((.((.....))))).)))((((((.(((........)))(((.....))).......))))))... ( -13.90)
>DroYak_CAF1 1814 111 - 1
ACUUGAAUAUGAGUAAUGCGCAAUUGAGACACCCCAUUUUA-AUGUGAUCUCUUCAACAGCUCAAGGGAUCCUUCUCCUCCAAAGGUGGACCCCGCACCCAAAAUCCCUAUU
((((......))))..(((((....(((((((.........-..))).)))).......))....(((.(((....(((....))).))).))))))............... ( -20.80)
>consensus
______________UUUAC______________ACAAUUGAAAUCUGCUCUCUUCAACAGCUCAAGGGAUCCUUCUCCUCCAAAGGCGGUCCACGCACCCAAAAUCCCUAUU
................................................................((((((.(((........)))(((.....))).......))))))... (-11.34 = -11.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:07 2006