Locus 4173

Sequence ID 3L_DroMel_CAF1
Location 12,185,602 – 12,185,716
Length 114
Max. P 0.913420
window6475

overview

Window 5

Location 12,185,602 – 12,185,716
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 93.33
Mean single sequence MFE -30.43
Consensus MFE -29.60
Energy contribution -28.85
Covariance contribution -0.75
Combinations/Pair 1.15
Mean z-score -1.09
Structure conservation index 0.97
SVM decision value 1.09
SVM RNA-class probability 0.913420
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12185602 114 + 23771897
UCCUCGAUGAUCGAGUUGAGAUCGAUGUUGAACGAAUACUCAUAGAGAUUGGAGUAGCGGUCGCGCUCCUUCCACGGCGACCGGUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((.....))))..((((((.((((.(((((..(((((..........))))).(((((((............))))))).)).)))))))...))))))(((....))). ( -29.70)
>DroVir_CAF1 7513 114 + 1
UCCUCGAUAAUCGAAUUGAGAUCAAUGUUGAACGAGUACUCGUACAGGUUCGAGUAACGAUCGCGCUCCUUCCAUGGCGAUCGAUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((((......))))))........((((((((((((((........)))))).(((((((.(.........)))))))).................))))))))...... ( -29.10)
>DroPse_CAF1 26 114 + 1
UCCUCGAUAAUCGAGUUGAGAUCUAUGUUGAACGAGUACUCGUAGAGGUUCGAGUAGCGGUCGCGCUCCUUCCACGGCGACCGGUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((.....))))..(((((((.(((((((((..((((((........)))))).(((((((............))))))).)).)))).))).)))))))(((....))). ( -34.40)
>DroGri_CAF1 894 114 + 1
UCCUCGAUAAUCGAGUUAAGAUCGAUGUUGAACGAGUACUCGUAGAGAUUUGAGUAACGAUCGCGCUCCUUCCAUGGCGAUCGAUGAUUCAUAUAAAGAUUUCGUUUACUAACA
...((((((.((((.......))))))))))((((....)))).(((((((((((..(((((((.(.........))))))))...)))))......))))))(((....))). ( -28.00)
>DroMoj_CAF1 40 114 + 1
UCCUCGAUAAUCGAAUUGAGAUCGAUGUUGAACGAAUACUCGUACAGGUUCGAGUAACGAUCGCGCUCCUUCCAUGGCGAUCGGUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((((......))))))........((((((((((((((........)))))).(((((((.(.........)))))))).................))))))))...... ( -29.70)
>DroAna_CAF1 40 114 + 1
UCCUCGAUGAUCGAAUUGAGAUCGAUGUUGAACGAGUACUCGUAGAGAUUCGAGUAGCGGUCGCGCUCCUUCCACGGCGACCGGUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((((......))))))........((((((((((((((........)))))).(((((((............))))))).................))))))))...... ( -31.70)
>consensus
UCCUCGAUAAUCGAAUUGAGAUCGAUGUUGAACGAGUACUCGUAGAGAUUCGAGUAACGAUCGCGCUCCUUCCACGGCGACCGGUGAUUCAUAUAAAGAUUUCGUUUACUAACA
..((((((......))))))........((((((((((((((........)))))).(((((((............))))))).................))))))))...... (-29.60 = -28.85 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:04 2006